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Putative Helicobacter pylori B125A RM systems
Ref: Su,H. et al. Sci Rep 9 (1), 11203 (2019)
REBASE ref # 29574
Complete sequence: 1,643,956 bp
GenBank #: CP024952
REBASE acronym: HpyB125A
Org_num: 37478
All begin CV724_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
465 | formyltetrahydrofolate deformylase | |||
470 | S | S.HpyBR25V (97% identity) | S.HpyB125AORF470P | |
475 | cagY like protein | |||
3250 | type I restriction endonuclease | |||
3255 | M | M.HpySW30XIII (95% identity) | M.HpyB125AORF3255P | |
3260 | S | S.Hpyfe27ORF4675P (67% identity) | S.HpyB125AORF3255P | |
3265 | R | HpyGM9XP (97% identity) | HpyB125AORF3255P | |
3270 | hydroxyethylthiazole kinase | |||
3545 | cadmium-translocating P-type ATPase | |||
3550 | S | S.HpyU417ORF3760P (68% identity) | S.HpyB125AORF3550P | |
3555 | outer membrane beta-barrel protein HofF | |||
5310 | 631 aa hypothetical protein | |||
5315 | R | HpyBR4ORF2210P (86% identity) | CCANNNNNNTC | HpyB125AORF5320P |
5320 | M | M.HpyCA26ORF4330P (96% identity) | CCANNNNNNTC | M.HpyB125AORF5320P |
5325 | S | S.HpyK051II (98% identity) | CCANNNNNNTC | S.HpyB125AORF5320P |
5335 | RNA degradosome polyphosphate kinase | |||
8020 | metal-dependent hydrolase | |||
8025 | R | HpyGE10ORF7410P (95% identity) | HpyB125AORF8030P | |
8030 | M | M.Hpy9310ORFNP (96% identity) | M.HpyB125AORF8030P | |
8035 | S | S.HpySW26ORF7465P (86% identity) | S.HpyB125AORF8030P | |
8040 | thymidylate synthase (FAD) | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
50 | DEAD/DEAH box helicase | |||
55 | RM | HpyNG06ORF7310P (64% identity) | HpyB125AORF55P | |
60 | CAAX protease | |||
265 | amidophosphoribosyltransferase | |||
270 | RM | HpySW12ORF7475P (99% identity) | HpyB125AORF270P | |
275 | S | S.HpyI005ORF7035P (62% identity) | S.HpyB125AORF270P | |
280 | DNA polymerase I | |||
750 | nicotinate-nucleotide diphosphorylase | |||
??? | RM | HpyU432ORF6585P (89% identity) | HpyB125AORF755P | |
760 | glycosyltransferase 9 family protein | |||
770 | glycosyltransferase 9 family protein | |||
775 | M | M.HpySW26XIV (98% identity) | M.HpyB125AORF775P | |
780 | R | HpyLI25VIP (98% identity) | HpyB125AORF775P | |
785 | DNA methyltransferase | |||
790 | DNA methyltransferase | |||
795 | M | M.HpyB136AORF725P (98% identity) | GANTC | M.HpyB125AORF795P |
800 | R | HpySW24IVP (96% identity) | GANTC | HpyB125AORF795P |
805 | DNA methyltransferase | |||
1530 | serine O-acetyltransferase | |||
??? | R | HpySW08IP (72% identity) | CATG | HpyB125AORF1545P |
1545 | M | M.HpySW26I (99% identity) | CATG | M.HpyB125AORF1545P |
1550 | HAD family hydrolase | |||
2015 | flagellar biosynthesis protein FlgM | |||
2020 | M | M.HpyR08XVI (94% identity) | M.HpyB125AORF2020P | |
2025 | 144 aa hypothetical protein | |||
2205 | Laminin subunit alpha-2 precursor | |||
2210 | R | HpyU409XIVP (98% identity) | TCNNGA | HpyB125AORF2215P |
2215 | M | M.HpySW27ORF5010P (98% identity) | TCNNGA | M.HpyB125AORF2215P |
2220 | acetyl-CoA carboxylase biotin carboxylase | |||
2945 | ATP-dependent DNA helicase | |||
2950 | M | M.HpyU436ORF1995P (96% identity) | GTNNAC | M.HpyB125AORF2950P |
2955 | R | HpyU437IXP (100% identity) | GTNNAC | HpyB125AORF2950P |
2960 | flagellar hook protein FlgE | |||
4120 | 480 aa hypothetical protein | |||
4125 | RM | HpyID9ORF3165P (85% identity) | HpyB125AORF4125P | |
4130 | glycerol-3-phosphate dehydrogenase | |||
4965 | endopeptidase | |||
??? | R | HpySW13VP (92% identity) | GTAC | HpyB125AORF4975P |
??? | M | M.HpyLI04ORF2335P (98% identity) | GTAC | M.HpyB125AORF4975P |
4980 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
5060 | catalase | |||
??? | R | HpySP306ORF2220P (73% identity) | HpyB125AORF5070P | |
??? | M | M.HpyT014ORF2410P (96% identity) | M.HpyB125AORF5070P | |
5075 | restriction endonuclease | |||
5070 | DNA (cytosine-5-)-methyltransferase | |||
5075 | R | HpySW26ORF2350P (100% identity) | ACNGT | HpyB125AORF5080P |
5080 | M | M.HpyB130AORF5160P (97% identity) | M.HpyB125AORF5080P | |
5085 | integrase | |||
5215 | 50 aa hypothetical protein | |||
5220 | M | M.HpySW10VII (42% identity) | M.HpyB125AORF5220P | |
5225 | translational GTPase TypA | |||
5230 | glycosyltransferase 9 family protein | |||
5235 | M | M.HpySW26ORF4530P (98% identity) | ATTAAT | M.HpyB125AORF5235P |
5240 | 364 aa hypothetical protein | |||
6340 | ATP-dependent chaperone ClpB | |||
6345 | M | M.HpyISR2V (99% identity) | CCGG | M.HpyB125AORF6345P |
6350 | R | HpyBGR7ORF1340P (82% identity) | CCGG | HpyB125AORF6345P |
6355 | 204 aa hypothetical protein | |||
6355 | 204 aa hypothetical protein | |||
6360 | M | M.HpyP001ORF1385P (98% identity) | TCGA | M.HpyB125AORF6360P |
6365 | exodeoxyribonuclease VII large subunit | |||
7185 | alpha-1,2-fucosyltransferase | |||
7190 | M | M.HpyU415VII (98% identity) | GATC | M.HpyB125AORF7190P |
7195 | 327 aa hypothetical protein | |||
7390 | sodium/proline symporter PutP | |||
7395 | M | M2.HpyL033VP (98% identity) | CCTC | M2.HpyB125AORF7395P |
7400 | M | M1.HpySWT11IX (100% identity) | CCTC | M1.HpyB125AORF7395P |
7405 | agmatine deiminase | |||
7930 | cytochrome C | |||
7935 | R | HpySP315XIIIP (98% identity) | TGCA | HpyB125AORF7940P |
??? | M | M.HpyHORF1485P (98% identity) | TGCA | M.HpyB125AORF7940P |
7950 | 68 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
35 | ATP-dependent DNA helicase RecG | |||
??? | M | M.HpyPO02ORF7015P (97% identity) | GWCAY | M.HpyB125AORF40P |
50 | R | HpyI014ORF7510P (94% identity) | GWCAY | HpyB125AORF40P |
55 | type II restriction endonuclease | |||
620 | 0 aa hypothetical protein | |||
625 | R | HpyPO108ORF325P (88% identity) | HpyB125AORF630P | |
630 | M | M.HpyGE13ORF6615P (96% identity) | M.HpyB125AORF630P | |
635 | DNA/RNA non-specific endonuclease | |||
685 | rod shape-determining protein MreC | |||
690 | R | Hpy166ORF5345P (95% identity) | HpyB125AORF695P | |
695 | M | M.HpyC212ORF7620P (92% identity) | M.HpyB125AORF695P | |
700 | DNA-binding response regulator |