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Putative Helicobacter pylori B128 7.13 RM systems
Ref: Dawson,E.M. et al. Helicobacter 24 (4), e12587 (2019)
REBASE ref # 29544
Complete sequence: 1,675,441 bp
GenBank #: CP042211
REBASE acronym: Hpy128713
Org_num: 37405
All begin D5R83_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
490 | formyltetrahydrofolate deformylase | |||
495 | S | S.HpyR3cORF510P (100% identity) | S.Hpy128713ORF495P | |
500 | nickel-binding protein HpnL | |||
4760 | outer membrane beta-barrel protein HofF | |||
4765 | S | S.HpyR3cORF4785P (100% identity) | S.Hpy128713ORF4765P | |
4770 | cadmium-translocating P-type ATPase | |||
5045 | hydroxyethylthiazole kinase | |||
5050 | R | HpyR3cORF5080P (100% identity) | Hpy128713ORF5060P | |
5055 | S | S.HpyR3cORF5080P (100% identity) | S.Hpy128713ORF5060P | |
5060 | M | M.HpyR3cORF5080P (100% identity) | M.Hpy128713ORF5060P | |
5065 | type I restriction endonuclease | |||
5340 | motility associated factor glycosyltransferase | |||
5345 | R | HpyR3cORF5365P (100% identity) | Hpy128713ORF5350P | |
5350 | M | M.HpyR3cORF5365P (100% identity) | M.Hpy128713ORF5350P | |
5355 | S | S.HpyB1281ORF5365P (100% identity) | S.Hpy128713ORF5350P | |
5365 | RNA degradosome polyphosphate kinase | |||
8155 | M48 family metallopeptidase | |||
8160 | R | HpyR3cORF8160P (100% identity) | Hpy128713ORF8165P | |
8165 | M | M.HpyR3cORF8160P (100% identity) | M.Hpy128713ORF8165P | |
??? | S | S.HpyR3cORF8160P (100% identity) | S.Hpy128713ORF8165P | |
8180 | 0 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
45 | DEAD/DEAH box helicase | |||
50 | RM | HpyR3cORF55P (100% identity) | Hpy128713ORF50P | |
55 | DUF4065 domain-containing protein | |||
130 | outer membrane protein | |||
135 | R | HpyR3cORF145P (100% identity) | CCATC | Hpy128713ORF140P |
140 | M | M1.HpyR3cORF145P (100% identity) | CCATC | M1.Hpy128713ORF140P |
145 | M | M2.HpyR3cORF145P (100% identity) | CCATC | M2.Hpy128713ORF140P |
150 | YjgP/YjgQ family permease | |||
275 | ComF family protein | |||
280 | RM | HpyR3cORF285P (100% identity) | Hpy128713ORF280P | |
285 | S | S.HpyR3cORF285P (51% identity) | S1.Hpy128713ORF280P | |
290 | S | S2.HpyB128KORF280P (100% identity) | S2.Hpy128713ORF280P | |
295 | DNA polymerase I | |||
565 | UDP-N-acetylmuramate dehydrogenase | |||
??? | R | HpyB128KORF570P (100% identity) | Hpy128713ORF570P | |
580 | type II restriction endonuclease | |||
575 | 138 aa hypothetical protein | |||
580 | R | HpyB8ORF127P (40% identity) | Hpy128713ORF580P | |
585 | S41 family peptidase | |||
1295 | serine O-acetyltransferase | |||
??? | R | HpyB8ORF281P (100% identity) | CATG | Hpy128713ORF1310P |
1310 | M | M.HpyR3cORF1320P (100% identity) | CATG | M.Hpy128713ORF1310P |
1315 | HAD family hydrolase | |||
1490 | purine-nucleoside phosphorylase | |||
1495 | R | HpyU408XP (100% identity) | TCNGA | Hpy128713ORF1500P |
1500 | M | M.HpyR3cORF1510P (100% identity) | TCNGA | M.Hpy128713ORF1500P |
1505 | outer membrane protein | |||
1790 | flagellar biosynthesis anti-sigma factor FlgM | |||
1795 | M | M.HpyR3cORF1800P (100% identity) | GCGC | M.Hpy128713ORF1795P |
1800 | 144 aa hypothetical protein | |||
1990 | Laminin subunit alpha-2 precursor | |||
1995 | R | HpyR3cORF1995P (100% identity) | TCNNGA | Hpy128713ORF2000P |
2000 | M | M.HpyR3cORF1995P (100% identity) | TCNNGA | M.Hpy128713ORF2000P |
2005 | acetyl-CoA carboxylase biotin carboxylase | |||
3075 | ATP-dependent helicase | |||
3080 | M | M.HpyR3cORF3080P (100% identity) | GTNNAC | M.Hpy128713ORF3080P |
3085 | R | HpyU437IXP (100% identity) | GTNNAC | Hpy128713ORF3080P |
3090 | flagellar hook protein FlgE | |||
3305 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
??? | M | M.HpyB128KORF6500P (100% identity) | GTAC | M.Hpy128713ORF3310P |
3315 | R | HpyR3cORF3315P (100% identity) | GTAC | Hpy128713ORF3310P |
3320 | M23 family metallopeptidase | |||
4160 | (Fe-S)-binding protein | |||
4165 | RM | HpyR3cORF4175P (100% identity) | Hpy128713ORF4165P | |
4170 | SIR2 family protein | |||
5065 | type I restriction endonuclease | |||
5070 | M | M.HpyR3cORF5085P (100% identity) | M.Hpy128713ORF5070P | |
5075 | R | HpyR3cORF5085P (100% identity) | Hpy128713ORF5070P | |
5080 | phosphatase PAP2 family protein | |||
5235 | 82 aa hypothetical protein | |||
??? | R | HpyB128KORF4550P (100% identity) | ACGT | Hpy128713ORF5245P |
5245 | M | M.HpyR3cORF5260P (100% identity) | ACGT | M.Hpy128713ORF5245P |
5250 | GIY-YIG nuclease family protein | |||
5245 | DNA cytosine methyltransferase | |||
5250 | R | HpyR3cORF5270P (100% identity) | ACNGT | Hpy128713ORF5255P |
5255 | M | M.HpyR3cORF5270P (100% identity) | ACNGT | M.Hpy128713ORF5255P |
5260 | translational GTPase TypA | |||
5265 | glycosyltransferase family 9 protein | |||
5270 | M | M.HpyU423II (100% identity) | ATTAAT | M.Hpy128713ORF5270P |
5275 | outer membrane beta-barrel protein | |||
6215 | AAA family ATPase | |||
6220 | M | M.HpyR3cORF6220P (100% identity) | CCGG | M.Hpy128713ORF6220P |
??? | R | Hpy713KORF6235P (100% identity) | CCGG | Hpy128713ORF6220P |
6230 | 198 aa hypothetical protein | |||
6230 | 198 aa hypothetical protein | |||
6235 | M | M.HpyR3cORF6235P (100% identity) | TCGA | M.Hpy128713ORF6235P |
6240 | exodeoxyribonuclease VII large subunit | |||
7070 | alpha-(1,2)-fucosyltransferase FutC1 | |||
7075 | M | M.HpyR3cORF7075P (90% identity) | M.Hpy128713ORF7075P | |
7080 | 356 aa hypothetical protein | |||
7290 | DNA cytosine methyltransferase | |||
7295 | R | HpyR3cORF7290P (100% identity) | GTSAC | Hpy128713ORF7300P |
7300 | M | M.HpyR3cORF7290P (100% identity) | GTSAC | M.Hpy128713ORF7300P |
7305 | HNH endonuclease | |||
7300 | site-specific DNA-methyltransferase | |||
??? | R | HpyB128KORF2475P (100% identity) | CCTC | Hpy128713ORF7310P |
7310 | DNA cytosine methyltransferase | |||
7315 | M | M2.HpyR3cORF7300P (100% identity) | CCTC | M2.Hpy128713ORF7310P |
7320 | agmatine deiminase | |||
7315 | site-specific DNA-methyltransferase | |||
??? | M | M.HpyB128KORFAP (100% identity) | M.Hpy128713ORFAP | |
7325 | N-6 DNA methylase | |||
7320 | agmatine deiminase | |||
??? | RM | HpyR3cORF7315P (99% identity) | Hpy128713ORF7325P | |
7330 | carboxylating nicotinate-nucleotide | |||
7520 | glycosyltransferase family 8 protein | |||
7525 | M | M.HpyR3cORF7520P (100% identity) | M.Hpy128713ORF7525P | |
7530 | site-specific DNA-methyltransferase | |||
8070 | elongation factor Ts | |||
??? | R | HpyR3cORF8070P (100% identity) | TGCA | Hpy128713ORF8080P |
8080 | M | M.HpyR3cORF8070P (100% identity) | TGCA | M.Hpy128713ORF8080P |
8085 | 68 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
35 | ATP-dependent DNA helicase RecG | |||
40 | M | M.HpyR3cORF45P (100% identity) | M.Hpy128713ORF40P | |
45 | R | HpyR3cORF45P (100% identity) | Hpy128713ORF40P | |
50 | class I SAM-dependent DNA methyltransferase | |||
7380 | copper response regulator transcription factor | |||
7385 | M | M.HpyR3cORF7375P (100% identity) | M.Hpy128713ORF7385P | |
7390 | R | HpyR3cORF7375P (100% identity) | Hpy128713ORF7385P | |
7395 | rod shape-determining protein MreC | |||
7445 | DNA/RNA non-specific endonuclease | |||
7450 | M | M.HpyR3cORF7440P (100% identity) | M.Hpy128713ORF7450P | |
7455 | R | HpyB8ORF1552P (100% identity) | Hpy128713ORF7450P | |
7460 | biotin synthase |