Escherichia coli W (KRIBB) |
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Putative Escherichia coli W (KRIBB) RM systems
Ref: Archer,C.T. et al. BMC Genomics 12 (1), 9 (2011)
REBASE ref # 12226
| Sequence length: | GenBank #: | |
| Chromosome: | 4,900,968 bp | CP002185 |
| plasmid pRK1: | 102,536 bp | CP002186 |
REBASE acronym: EcoW
Org_num: 6484
All begin ECW_m, ECW_P1m
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4635 | 582 aa hypothetical protein | |||
| 4636 | S | S.EcohubtORF20055P (90% identity) | AACNNNNNNGTGC | S.EcoWORF4637P |
| 4637 | M | M.EcohubtORF20055P (100% identity) | AACNNNNNNGTGC | M.EcoWORF4637P |
| 4638 | R | EcohubtORF20055P (100% identity) | AACNNNNNNGTGC | EcoWORF4637P |
| 4639 | Predicted transcriptional regulator | |||
| 4659 | 428 aa hypothetical protein | |||
| 4660 | S | S.SflN101ORF11895P (100% identity) | TGANNNNNNTCCA | S.EcoWORF4661P |
| 4661 | M | M.EcohubtORF19935P (100% identity) | TGANNNNNNTCCA | M.EcoWORF4661P |
| 4662 | 128 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 914 | TraR/DksA family transcriptional regulator | |||
| 915 | M | M.EcohubtORF7795P (100% identity) | GATC | M.EcoWORF915P |
| 916 | replication gene A | |||
| 2134 | predicted inner membrane protein | |||
| 2135 | V | V.SsoSE61DcmP (100% identity) | V.EcoWDcmP | |
| 2136 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoWDcmP |
| 2137 | predicted phosphohydrolase | |||
| 2566 | 119 aa conserved hypothetical protein | |||
| 2567 | M | M.SflN97ORF15810P (100% identity) | GATC | M.EcoWORF2567P |
| 2568 | NinB | |||
| 3527 | global DNA-binding transcriptional dual | |||
| 3528 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoWORF3528P |
| 3529 | 59 aa conserved hypothetical protein | |||
| 3641 | D-ribulose-5-phosphate 3-epimerase | |||
| 3642 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoWDamP |
| 3643 | predicted protein | |||
| 4233 | 151 aa conserved hypothetical protein | |||
| 4234 | M | M.EcosE2ORF21575P (100% identity) | GGCC | M.EcoWORF4234P |
| 4235 | 341 aa conserved hypothetical protein | |||
| plasmid pRK1 | ||||
| 110 | 103 aa conserved hypothetical protein | |||
| 111 | M | M.Sso8ORF23800P (100% identity) | M.EcoWORF111P | |
| 112 | 73 aa conserved hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4662 | 128 aa hypothetical protein | |||
| 4663 | R | EcohubtMcrCP (100% identity) | EcoWMcrCP | |
| 4664 | R | SflN101McrBP (100% identity) | EcoWMcrBP | |
| 4665 | restriction endonuclease | |||