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Putative Helicobacter pylori BCS100H1 RM systems
Ref: Kennemann,L. et al. Proc. Natl. Acad. Sci. U.S.A. 108 (12), 5033-5038 (2011)
REBASE ref # 28469
Contig set: 1,548,400 bp
GenBank #: CADC00000000 (NZ_CADC00000000)
REBASE acronym: HpyH1
Org_num: 34624
All begin ORF_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
1 | M | M.Hpy8C10ORFYP (100% identity) | M.HpyH1ORFPP | |
2 | DNA cytosine methyltransferase | |||
??? | S | S.Hpy8C10ORFC1P (100% identity) | S.HpyH1ORFD1P | |
156 | glutamine--fructose-6-phosphate transaminase | |||
159 | S | S.Hpy8C10ORFB1P (100% identity) | S.HpyH1ORFZP | |
160 | M | M.Hpy8C10ORFB1P (100% identity) | M.HpyH1ORFZP | |
161 | IS607 family transposase | |||
162 | transposase | |||
??? | R | Hpy8C10ORFB1P (100% identity) | HpyH1ORFZP | |
166 | M48 family peptidase | |||
468 | polyphosphate kinase 1 | |||
469 | S | S.Hpy8C10ORFXP (100% identity) | S.HpyH1ORFHP | |
470 | M | M.Hpy8C10ORFXP (100% identity) | M.HpyH1ORFHP | |
471 | R | Hpy8C10ORFXP (100% identity) | HpyH1ORFHP | |
472 | 195 aa hypothetical protein N198_06625 | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
1 | type I restriction-modification system subunit M | |||
2 | M | M.Hpy8C10ORFZP (100% identity) | M.HpyH1ORFQP | |
??? | R | Hpy8C10ORFZP (100% identity) | HpyH1ORFQP | |
6 | 82 aa hypothetical protein HPHPP11B_1069 | |||
1 | M | M.Hpy8C10ORFTP (100% identity) | ATTAAT | M.HpyH1II |
2 | modification methylase VspI domain protein | |||
3 | flagellar biosynthesis anti-sigma factor FlgM | |||
4 | M | M.Hpy8C10ORFUP (100% identity) | GCGC | M.HpyH1ORFBP |
5 | 144 aa hypothetical protein HMPREF1427_00277 | |||
5 | 112 aa hypothetical protein | |||
??? | M | M.Hpy8C10ORFJP (100% identity) | M.HpyH1ORFUP | |
9 | R | Hpy8C10ORFJP (100% identity) | ACNGT | HpyH1ORFUP |
11 | DNA -methyltransferase | |||
9 | GIY-YIG nuclease family protein | |||
11 | M | M.Hpy8C10ORFHP (100% identity) | M.HpyH1ORFVP | |
12 | R | Hpy8C10ORFHP (100% identity) | HpyH1ORFVP | |
15 | catalase family peroxidase | |||
17 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
18 | R | Hpy8C10ORFLP (100% identity) | GTNNAC | HpyH1VIIIP |
19 | M | M.Hpy8C10ORFLP (99% identity) | GTNNAC | M.HpyH1VIII |
20 | ATP-dependent helicase | |||
21 | Laminin subunit alpha-2 precursor | |||
23 | R | Hpy8C10ORFPP (100% identity) | TCNNGA | HpyH1XIVP |
24 | M | M.Hpy8C10ORFPP (100% identity) | TCNNGA | M.HpyH1XIV |
25 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
59 | restriction endonuclease subunit S | |||
60 | RM | Hpy8C10ORFCP (100% identity) | HpyH1ORFWP | |
61 | ComF family protein | |||
43 | DNA topoisomerase subunit B | |||
45 | M | M.Hpy8C10ORFEP (100% identity) | GTAC | M.HpyH1ORFIP |
46 | R | Hpy8C10ORFEP (100% identity) | GTAC | HpyH1ORFIP |
47 | metalloendopeptidase like protein | |||
52 | outer membrane protein | |||
53 | M | M.Hpy8C10ORFOP (100% identity) | TCNGA | M.HpyH1X |
54 | R | Hpy8C10ORFOP (100% identity) | TCNGA | HpyH1XP |
56 | phosphopentomutase | |||
132 | 362 aa hypothetical protein HMPREF1411_00815 | |||
??? | RM | Hpy8C10ORFGP (100% identity) | HpyH1ORFXP | |
136 | DEAD/DEAH box helicase | |||
189 | 68 aa hypothetical protein | |||
190 | M | M.Hpy8C10ORFRP (100% identity) | TGCA | M.HpyH1XV |
191 | R | Hpy8C10ORFRP (100% identity) | TGCA | HpyH1XVP |
194 | 131 aa hypothetical protein | |||
199 | exodeoxyribonuclease VII large subunit | |||
200 | M | M.Hpy8C10ORFVP (100% identity) | TCGA | M.HpyH1IX |
201 | 78 aa hypothetical protein HMPREF1401_01153 | |||
203 | 63 aa hypothetical protein | |||
204 | R | Hpy57VP (95% identity) | CCGG | HpyH1IIIP |
206 | M | M.Hpy8C10ORFWP (100% identity) | CCGG | M.HpyH1III |
207 | AAA family ATPase | |||
281 | 3QBU_A Chain A, Crystal Structure Of Putative Peptidoglycan Deactelyase From Helicobacter Pylori | |||
282 | R | Hpy8C10ORFNP (100% identity) | CTNAG | HpyH1VP |
283 | M | M.Hpy8C10ORFNP (100% identity) | CTNAG | M.HpyH1V |
284 | uncharacterized protein | |||
332 | site-specific DNA-methyltransferase | |||
334 | M | M2.Hpyfe101ORF6985P (100% identity) | GAAGA | M1.HpyH1VI |
335 | M | M1.Hpy8C10ORFBP (100% identity) | GAAGA | M2.HpyH1VI |
336 | R | Hpy8C10ORFBP (100% identity) | GAAGA | HpyH1VIP |
337 | copper response regulator transcription factor CrdR | |||
349 | carboxylating nicotinate-nucleotide diphosphorylase | |||
??? | RM | Hpy8C10ORFFP (100% identity) | HpyH1ORFA1P | |
354 | site-specific DNA-methyltransferase | |||
??? | hypothetical protein | |||
354 | M | M.HpySG38X (100% identity) | GANTC | M.HpyH1VII |
355 | R | Hpy8C10ORFMP (100% identity) | GANTC | HpyH1VIIP |
356 | S41 family peptidase | |||
365 | TerC family protein | |||
367 | M | M1.Hpy8C10ORFAP (100% identity) | CCTC | M1.HpyH1IV |
369 | M | M2.Hpy8C10ORFAP (100% identity) | CCTC | M2.HpyH1IVP |
370 | sodium/proline symporter | |||
438 | 2H1Y_A Chain A, Crystal Structure Of Malonyl-coa:acyl Carrier Protein Transacylase From Helicobacter Pylori | |||
440 | R | Hpy8C10ORFQP (100% identity) | GATC | HpyH1XVIP |
441 | M | M.Hpy8C10ORFQP (100% identity) | GATC | M.HpyH1XVI |
443 | alpha-1,2-fucosyltransferase | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
3 | biotin synthase | |||
5 | R | Hpy87A3ORFCP (100% identity) | HpyH1ORFDP | |
6 | M | M.Hpy8C10ORFDP (100% identity) | M.HpyH1ORFDP | |
7 | 86 aa hypothetical protein HPCPY1662_0015 | |||
??? | hypothetical protein | |||
136 | R | Hpy8C10ORFKP (100% identity) | HpyH1ORFYP | |
??? | M | M.Hpy8C10ORFKP (100% identity) | M.HpyH1ORFYP | |
141 | ATP-dependent DNA helicase | |||
329 | rod shape-determining MreC family protein | |||
330 | R | Hpy8C10ORFIP (100% identity) | GGCAA | HpyH1XIP |
332 | M | M.Hpy8C10ORFIP (100% identity) | GGCAA | M.HpyH1XI |
334 | DUF1887 family protein |