Escherichia coli U12A |
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Putative Escherichia coli U12A RM systems
Ref: Forde,B.M. et al. unpublished
REBASE ref # 28281
| Sequence length: | GenBank #: | |
| Chromosome: | 5,018,242 bp | CP035476 |
| plasmid pU12A_A: | 151,747 bp | CP035468 |
| plasmid pU12A_B: | 87,354 bp | CP035469 |
| plasmid pU12A_C: | 69,518 bp | CP035470 |
REBASE acronym: EcoU12A
Org_num: 33598
All begin U12A_, U12A_A, U12A_B, U12A_C
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 294 | 156 aa hypothetical protein | |||
| 295 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoU12AORF296P |
| 296 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoU12AORF296P |
| 297 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoU12AORF296P |
| 298 | 260 aa hypothetical protein | |||
| 4760 | Toxic protein SymE | |||
| 4761 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoU12AORF4763P |
| 4762 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoU12AORF4763P |
| 4763 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoU12AORF4763P |
| 4764 | Mrr restriction system protein | |||
| plasmid pU12A_A | ||||
| 85 | 167 aa hypothetical protein | |||
| 86 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNNCTGG | EcoU12AORF88P |
| 87 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.EcoU12AORF88P |
| 88 | M | M.SenceORFJP (99% identity) | CAAYNNNNNNCTGG | M.EcoU12AORF88P |
| 89 | 73 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 977 | 71 aa hypothetical protein | |||
| 978 | M | M.KpnYN1ORFGP (89% identity) | M.EcoU12AORF978P | |
| 979 | HTH-type transcriptional regulator ImmR | |||
| 1422 | 65 aa hypothetical protein | |||
| 1423 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoU12AORF1423P |
| 1426 | Anti-adapter protein IraM | |||
| 2099 | inner membrane transporter YedA | |||
| 2100 | V | V.SflC32DcmP (74% identity) | V.EcoU12ADcmP | |
| 2101 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoU12ADcmP |
| 2102 | 231 aa hypothetical protein | |||
| 3495 | DNA-binding protein Fis | |||
| 3496 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoU12AORF3496P |
| 3497 | 59 aa hypothetical protein | |||
| 3615 | Ribulose-phosphate 3-epimerase | |||
| 3616 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoU12ADamP |
| 3617 | Cell division protein DamX | |||
| 4693 | 141 aa hypothetical protein | |||
| 4694 | M | M1.EcosS9ORF2810P (100% identity) | M1.EcoU12AORF4694P | |
| 4695 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoU12AORF4694P |
| 4696 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoU12AORF4694P |
| 4697 | 428 aa hypothetical protein | |||
| plasmid pU12A_A | ||||
| 72 | 73 aa hypothetical protein | |||
| 73 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoU12AORF73P |
| 74 | 103 aa hypothetical protein | |||
| plasmid pU12A_B | ||||
| 55 | 73 aa hypothetical protein | |||
| 56 | M | M.SspPIBORF23080P (100% identity) | M.EcoU12AORF56P | |
| 57 | 70 aa hypothetical protein | |||
| plasmid pU12A_C | ||||
| 22 | 308 aa hypothetical protein | |||
| 23 | M | M.Sfl7ORF23565P (100% identity) | M.EcoU12AORF23P | |
| 24 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4696 | 579 aa hypothetical protein | |||
| ??? | R | EcoU15AMcrCP (100% identity) | EcoU12AMcrCP | |
| 4698 | R | EcosS3McrBP (100% identity) | EcoU12AMcrBP | |
| 4699 | teichuronic acid biosynthesis | |||