|
Putative Helicobacter pylori PMSS1 RM systems
Ref: Mimuro,H. et al. unpublished
REBASE ref # 28141
Complete sequence: 1,603,093 bp
GenBank #: AP017633
REBASE acronym: HpyMSS1
Org_num: 33286
All begin HPPMSS1_c
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
98 | formyltetrahydrofolate deformylase | |||
99 | S | S.Hpyoh1ORF1965P (100% identity) | S.HpyMSS1ORF99P | |
100 | 72 aa hypothetical protein | |||
883 | outer membrane protein | |||
884 | S | S.Hpyoh1ORF5590P (100% identity) | S.HpyMSS1ORF886P | |
885 | 258 aa hypothetical protein | |||
??? | M | M.HpyU105ORF3825P (100% identity) | M.HpyMSS1ORF886P | |
887 | cadmium, zinc and cobalt-transporting ATPase | |||
940 | hydroxyethylthiazole kinase | |||
941 | R | Hpyoh1ORF5270P (100% identity) | HpyMSS1ORF943P | |
942 | S | S.Hpyoh1ORF5270P (100% identity) | S.HpyMSS1ORF943P | |
??? | M | M.HpySS1DORF484BP (100% identity) | M.HpyMSS1ORF943BP | |
944 | transposase | |||
945 | hypothetical protein | |||
946 | M | M.HpySS1DORF484AP (100% identity) | M.HpyMSS1ORF943AP | |
947 | modification methylase HaeIII | |||
1002 | hypothetical protein | |||
??? | R | HpyAMORF4990P (100% identity) | HpyMSS1ORF1006P | |
1006 | M | M.Hpyoh1ORF4975P (100% identity) | M.HpyMSS1ORF1006P | |
1007 | S | S.Hpyoh1ORF4975P (100% identity) | S.HpyMSS1ORF1006P | |
1008 | polyphosphate kinase | |||
1498 | 235 aa hypothetical protein | |||
1499 | R | Hpyoh1ORF2485P (100% identity) | HpyMSS1ORFBP | |
??? | M | M.Hpyoh1ORF2485P (100% identity) | M.HpyMSS1ORFBP | |
1502 | S | S.Hpyoh1ORF2485P (100% identity) | S.HpyMSS1ORFBP | |
1503 | thymidylate synthase ThyX | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
11 | 714 aa hypothetical protein | |||
12 | RM | Hpyoh1ORF2400P (100% identity) | HpyMSS1ORF12P | |
13 | 179 aa hypothetical protein | |||
30 | helicobacter outer membrane protein | |||
31 | R | Hpyoh1ORF2300P (100% identity) | CCATC | HpyMSS1ORF32P |
??? | M | M2.Hpyoh1ORF2300P (93% identity) | CCATC | M1.HpyMSS1ORF32P |
33 | M | M1.Hpyoh1ORF2300P (100% identity) | CCATC | M2.HpyMSS1ORF32P |
34 | permease YjgP/YjgQ family protein | |||
59 | 191 aa hypothetical protein | |||
60 | RM | Hpyoh1ORF2165P (100% identity) | HpyMSS1ORF60P | |
61 | S | S.Hpyoh1ORF2165P (100% identity) | S.HpyMSS1ORF60P | |
62 | DNA polymerase I | |||
155 | nicotinate-nucleotide | |||
156 | RM | Hpyoh1ORF1675P (100% identity) | HpyMSS1ORF156P | |
157 | modification methylase DpnIIB | |||
156 | N-6 DNA Methylase | |||
157 | M | M.Hpyoh1ORF1670P (100% identity) | GANTC | M.HpyMSS1ORF157P |
158 | R | Hpyoh1ORF1670P (100% identity) | GANTC | HpyMSS1ORF157P |
159 | carboxy-terminal processing protease | |||
296 | helicobacter pylori IceA2 protein | |||
297 | M | M.HpySS1DORF1159P (100% identity) | CATG | M.HpyMSS1ORF297P |
298 | phosphoglycolate phosphatase | |||
382 | anti-sigma-28 factor, FlgM | |||
383 | M | M.Hpyoh1ORF495P (100% identity) | M.HpyMSS1ORF383P | |
384 | R | Hpyoh1ORF495P (100% identity) | HpyMSS1ORF383P | |
385 | 144 aa hypothetical protein | |||
418 | 197 aa hypothetical protein | |||
419 | R | Hpyoh1ORF6430P (100% identity) | TCNNGA | HpyMSS1ORF420P |
420 | M | M.Hpyoh1ORF6430P (100% identity) | TCNNGA | M.HpyMSS1ORF420P |
421 | biotin carboxylase | |||
565 | helicobacter outer membrane protein | |||
566 | RM | Hpyoh1ORF7185P (51% identity) | HpyMSS1ORF566BP | |
567 | RM | HpySS1DORF875AP (100% identity) | HpyMSS1ORF566AP | |
568 | anaerobic glycerol-3-phosphate | |||
735 | murein DD-endopeptidase MepM | |||
??? | R | HpySS1DORF695P (100% identity) | GTAC | HpyMSS1ORF737P |
??? | M | M.HpySS1DORF695P (100% identity) | GTAC | M.HpyMSS1ORF737P |
738 | DNA polymerase III subunit beta | |||
782 | flagellar hook protein FlgE | |||
783 | R | Hpyoh1ORF6110P (100% identity) | GTNNAC | HpyMSS1ORF784P |
??? | M | M.Hpyoh1ORF6110P (93% identity) | GTNNAC | M.HpyMSS1ORF784P |
785 | DNA helicase II | |||
946 | hypothetical protein | |||
947 | M | M.Hpyoh1ORF5265P (100% identity) | M.HpyMSS1ORF947P | |
??? | R | HpySS1DORF483P (100% identity) | HpyMSS1ORF947P | |
949 | phosphatidylglycerophosphatase B | |||
982 | catalase-related peroxidase precursor | |||
983 | R | Hpyoh1ORF5085P (100% identity) | ACGT | HpyMSS1ORF984P |
984 | M | M.Hpyoh1ORF5085P (100% identity) | ACGT | M.HpyMSS1ORF984P |
985 | 204 aa hypothetical protein | |||
984 | BsuMI modification methylase | |||
985 | R | Hpyoh1ORF5075P (100% identity) | ACNGT | HpyMSS1ORF986P |
986 | M | M.Hpyoh1ORF5075P (100% identity) | ACNGT | M.HpyMSS1ORF986P |
987 | GTP-binding protein TypA/BipA | |||
988 | 282 aa hypothetical protein | |||
989 | M | M.Hpyoh1ORF5060P (100% identity) | ATTAAT | M.HpyMSS1ORF989P |
990 | helicobacter outer membrane protein | |||
1091 | 156 aa hypothetical protein | |||
1092 | M | M.Hpyoh1ORF4535P (100% identity) | M.HpyMSS1ORF1092P | |
1093 | elongation factor 4 | |||
1180 | hypothetical protein | |||
1181 | M | M1.HpySS1DORF249P (100% identity) | TCGA | M.HpyMSS1ORF1181P |
1182 | exodeoxyribonuclease 7 large subunit | |||
1342 | glycosyl transferase family 11 | |||
1343 | M | M.Hpyoh1ORF3300P (100% identity) | GATC | M.HpyMSS1ORF1343P |
1344 | R | Hpyoh1ORF3300P (100% identity) | GATC | HpyMSS1ORF1343P |
1345 | malonyl CoA-acyl carrier protein transacylase | |||
1379 | sodium/proline symporter | |||
1380 | M | M2.HpySS1DORF50P (100% identity) | CCTC | M2.HpyMSS1ORF1380P |
1381 | M | M1.Hpyoh1ORF3110P (100% identity) | CCTC | M1.HpyMSS1ORF1380P |
1382 | agmatine deiminase | |||
1480 | hypothetical protein | |||
1481 | M | M.Hpyoh1ORF2575P (100% identity) | TGCA | M.HpyMSS1ORF1481P |
1482 | hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
7 | ATP-dependent DNA helicase RecG | |||
??? | M | M.Hpyoh1ORF2415P (100% identity) | M.HpyMSS1ORFCP | |
10 | R | Hpyoh1ORF2415P (100% identity) | HpyMSS1ORFCP | |
11 | 714 aa hypothetical protein | |||
128 | biotin synthase | |||
129 | R | HpySS1DORF1326P (100% identity) | HpyMSS1ORF130P | |
130 | M | M.Hpyoh1ORF1800P (100% identity) | M.HpyMSS1ORF130P | |
131 | DNA/RNA non-specific endonuclease | |||
141 | rod shape-determining protein MreC | |||
142 | R | Hpyoh1ORF1735P (100% identity) | HpyMSS1ORFAP | |
??? | M | M.Hpyoh1ORF1735P (100% identity) | M.HpyMSS1ORFAP | |
145 | transcriptional regulatory protein QseB |