Streptomyces species AC1-42W |
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Putative Streptomyces species AC1-42W RM systems
Ref: De Leon,M.P. et al. unpublished
REBASE ref # 27918
Contig set: 7,648,131 bp
GenBank #: QKWY00000000 (NZ_QKWY00000000)
REBASE acronym: Ssp142W
Org_num: 32771
All begin DNK56_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3035 | 694 aa hypothetical protein | |||
| 3040 | M | M.Ssp142TI (100% identity) | AGCANNNNNNTCGC | M.Ssp142WI |
| 3045 | S | S.Ssp142TI (100% identity) | AGCANNNNNNTCGC | S.Ssp142WI |
| 3050 | R | Ssp142TIP (100% identity) | AGCANNNNNNTCGC | Ssp142WIP |
| 3055 | MarR family transcriptional regulator | |||
| 26760 | 311 aa hypothetical protein | |||
| 26765 | M | M.Ssp142TORF5915P (100% identity) | CGACNNNNNCTGC | M.Ssp142WII |
| 26770 | S | S.Smi01684ORF27400P (86% identity) | CGACNNNNNCTGC | S.Ssp142WII |
| 26775 | IS5/IS1182 family transposase | |||
| 26780 | 46 aa hypothetical protein | |||
| 26785 | DUF397 domain-containing protein | |||
| 26790 | XRE family transcriptional regulator | |||
| 26795 | 68 aa hypothetical protein | |||
| 26800 | R | Ssp142TORF5915P (100% identity) | CGACNNNNNCTGC | Ssp142WIIP |
| 26805 | 252 aa hypothetical protein | |||
| 11560 | TldD/PmbA family protein | |||
| ??? | R | Ssp142TORF19865P (100% identity) | Ssp142WORF11575P | |
| 11570 | S | S.Ssp142TORF19865P (100% identity) | S.Ssp142WORF11575P | |
| 11575 | M | M.Ssp142TORF19865P (100% identity) | M.Ssp142WORF11575P | |
| 11580 | DUF397 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2235 | transcriptional regulator | |||
| 2240 | M | M.Ssp142TII (100% identity) | CTGCAG | M.Ssp142WIII |
| 2245 | R | Ssp142TIIP (100% identity) | CTGCAG | Ssp142WIIIP |
| 2250 | IS5/IS1182 family transposase | |||
| 3865 | 488 aa hypothetical protein | |||
| 3870 | RM | Ssp142TORF27700P (100% identity) | Ssp142WORF3870P | |
| 3875 | DUF397 domain-containing protein | |||
| 4760 | 288 aa hypothetical protein | |||
| 4765 | M | M.Ssp142TORF26810P (100% identity) | M.Ssp142WORF4765P | |
| 4770 | 208 aa hypothetical protein | |||
| 6290 | 298 aa hypothetical protein | |||
| 6295 | M | M2.Ssp142TORF25260P (73% identity) | M1.Ssp142WORF6295P | |
| 6300 | M | M1.Ssp142TORF25260P (64% identity) | M2.Ssp142WORF6295P | |
| 6305 | V | V.Ssp142TORF25260P (100% identity) | V.Ssp142WORF6295P | |
| 6310 | endonuclease | |||
| 25535 | helicase | |||
| 25540 | RM | Ssp142TORF7140P (100% identity) | Ssp142WORF25540P | |
| 25545 | DUF397 domain-containing protein | |||
| 26600 | 377 aa hypothetical protein | |||
| 26605 | M | M.Ssp142TORF6075P (100% identity) | M.Ssp142WORF26605P | |
| 26610 | 307 aa hypothetical protein | |||
| 26610 | 307 aa hypothetical protein | |||
| 26615 | M | M.Ssp142TORF6065P (100% identity) | M.Ssp142WORF26615P | |
| 26620 | V | V.Ssp142TORF6040P (100% identity) | V.Ssp142WORF26615P | |
| 26625 | 62 aa hypothetical protein | |||
| 30540 | 584 aa hypothetical protein | |||
| 30545 | RM | Ssp142TORF2135P (100% identity) | Ssp142WORF30545P | |
| 30550 | helicase | |||
| 30555 | DEAD/DEAH box helicase | |||
| 30560 | M | M.Ssp142TORF2120P (100% identity) | M.Ssp142WORF30560P | |
| 30565 | malate synthase A | |||
| 13155 | 375 aa hypothetical protein | |||
| 13160 | M | M.SspINR7ORF16180P (100% identity) | M.Ssp142WORF13160P | |
| 13165 | proline dehydrogenase | |||
| 13175 | 816 aa hypothetical protein | |||
| 13180 | M | M.SspINR7ORF16155P (100% identity) | M.Ssp142WORF13180P | |
| 13185 | V | V.Ssp142TORF18260P (100% identity) | V.Ssp142WORF13180P | |
| 13190 | 62 aa hypothetical protein | |||
| 31440 | helicase | |||
| 31445 | RM | Ssp142TORF1240P (100% identity) | Ssp142WORF31445P | |
| 31450 | SAM-dependent methyltransferase | |||
| 31445 | SAM-dependent DNA methyltransferase | |||
| 31450 | M | M.Ssp142TORF1235P (98% identity) | M.Ssp142WORF31450P | |
| 31455 | alpha/beta hydrolase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 30445 | sucrase ferredoxin | |||
| 30450 | R | Ssp142TMcrCP (100% identity) | Ssp142WMcrCP | |
| 30455 | R | Ssp142TMcrBP (100% identity) | Ssp142WMcrBP | |
| 30460 | RNA polymerase subunit sigma | |||