Streptococcus suis SRD478 |
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Putative Streptococcus suis SRD478 RM systems
Ref: Nicholson,T.L. et al. unpublished
REBASE ref # 20989
Complete sequence: 2,062,916 bp
GenBank #: CP017088
REBASE acronym: Ssu478
Org_num: 17574
All begin A7J08_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 7500 | 135 aa hypothetical protein | |||
| 7505 | R | Sma11558SIIP (92% identity) | Ssu478ORF30P | |
| 7510 | 154 aa hypothetical protein | |||
| 7520 | 275 aa hypothetical protein | |||
| 7525 | S | S2.Ssp741ORF8365P (44% identity) | S1.Ssu478ORF7545P | |
| 7530 | integrase | |||
| 7535 | S | S3.Sma11558SII (39% identity) | S2.Ssu478ORF7545P | |
| 7540 | S | S1.Sma11558SIIP (89% identity) | S3.Ssu478ORF7545P | |
| 7545 | M | M.Sma11558SII (92% identity) | M.Ssu478ORF7545P | |
| 7550 | SAM-dependent methyltransferase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1230 | transposase | |||
| 1235 | M | M.SsuS40ORF1245P (100% identity) | M.Ssu478ORF1235P | |
| 1240 | R | SsuS40ORF1245P (99% identity) | Ssu478ORF1235P | |
| 1245 | tagatose-6-phosphate kinase | |||
| 4795 | replication initiator protein | |||
| 4800 | M | M.Ssu2ORF5685P (98% identity) | M.Ssu478ORF4800P | |
| 4805 | 142 aa hypothetical protein | |||
| 5490 | 261 aa hypothetical protein | |||
| ??? | RM | Sps7493ORF4300P (15% identity) | Ssu478ORF6510BP | |
| 5500 | RM | Ssp29887ORF6305P (95% identity) | Ssu478ORF6510AP | |
| 5505 | GTP pyrophosphokinase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6545 | 187 aa hypothetical protein | |||
| 6550 | R | Ssu2ORF4230P (97% identity) | Ssu478ORF3750P | |
| 6555 | M | M.Ssu2ORF4230P (99% identity) | M.Ssu478ORF3750P | |
| 6560 | tRNA uridine-5-carboxymethylaminomethyl(34) | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5040 | glutamine-hydrolyzing GMP synthase | |||
| 5045 | R | Ssu1081McrCP (99% identity) | Ssu478McrCP | |
| 5050 | R | Ssu1240McrBP (98% identity) | Ssu478McrBP | |
| 5055 | 0 aa hypothetical protein | |||