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Putative Helicobacter pylori KH44 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
GenBank #: PHLI00000000
REBASE acronym: HpyKH44
Org_num: 32298
All begin ORF_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
1 | S | S.HpyKH44ORFMP (52% identity) | S.HpyKH44ORFNP | |
??? | R | HpyMA02XIVP (96% identity) | HpyKH44ORFNP | |
6 | hydroxyethylthiazole kinase | |||
1 | S | S.HpyC122ORF870P (95% identity) | S.HpyKH44ORFZP | |
2 | M | M.HpyYN483ORFHP (93% identity) | M.HpyKH44ORFZP | |
4 | R | HpyKH2ORFFP (94% identity) | HpyKH44ORFZP | |
6 | M48 family peptidase | |||
1 | S | S.HpySW32III (97% identity) | S.HpyKH44ORFA1P | |
2 | M | N-6 DNA methylase, partial | M.HpyKH44ORFA1P | |
??? | R | HpyF007ORF2325P (91% identity) | HpyKH44ORFA1P | |
6 | 631 aa hypothetical protein U063_1207 | |||
36 | phosphatase PAP2 family protein | |||
37 | M | M.HpyKH45ORFYP (88% identity) | M.HpyKH44ORFYP | |
38 | 60 aa hypothetical protein | |||
90 | cadmium-translocating P-type ATPase | |||
93 | S | S.HpyKH45ORFRP (96% identity) | S.HpyKH44ORFMP | |
94 | outer membrane beta-barrel protein HofF | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
4 | catalase family peroxidase | |||
5 | M | M.HpyF020ORF2290P (97% identity) | M.HpyKH44ORFB1P | |
6 | GIY-YIG nuclease family protein | |||
5 | DNA cytosine methyltransferase | |||
6 | R | GIY-YIG nuclease family protein | ACNGT | HpyKH44ORFC1P |
8 | M | M.HpySG33II (97% identity) | ACNGT | M.HpyKH44ORFC1P |
9 | translational GTPase TypA | |||
4 | 144 aa hypothetical protein HMPREF1427_00277 | |||
5 | M | M.HpySW05XI (95% identity) | M.HpyKH44ORFIP | |
6 | 62 aa hypothetical protein | |||
11 | S41 family peptidase | |||
12 | R | HpyMM05VP (96% identity) | GANTC | HpyKH44ORFWP |
13 | M | M.HpyKH17ORFKP (99% identity) | GANTC | M.HpyKH44ORFWP |
14 | adenine specific DNA methyltransferase 2 domain protein | |||
11 | modification methylase VspI domain protein | |||
??? | M | M.HpyISR3III (96% identity) | M.HpyKH44ORFD1P | |
15 | adenine specific DNA methyltransferase | |||
??? | RM | HpyFD430ORFUP (89% identity) | HpyKH44ORFXP | |
18 | carboxylating nicotinate-nucleotide diphosphorylase | |||
20 | DNA topoisomerase subunit B | |||
22 | M | M.HpyKH10ORFKP (95% identity) | M.HpyKH44ORFFP | |
23 | R | HpyKH36ORFDP (96% identity) | HpyKH44ORFFP | |
24 | metalloendopeptidase like protein | |||
24 | 95 aa hypothetical protein | |||
25 | RM | HpyUM114ORF435P (93% identity) | HpyKH44ORFRP | |
27 | DUF4065 domain-containing protein | |||
20 | ATP-dependent helicase | |||
22 | M | M.HpyKH39ORFMP (96% identity) | GTNNAC | M.HpyKH44ORFHP |
23 | R | HpyMA17XIIP (99% identity) | GTNNAC | HpyKH44ORFHP |
24 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
29 | DNA-binding response regulator | |||
??? | R | Hpyfe75ORF7255P (94% identity) | HpyKH44ORFUP | |
33 | M | site-specific DNA-methyltransferase | M1.HpyKH44ORFUP | |
34 | M | M1.HpyOK311ORFRP (98% identity) | GAAGA | M2.HpyKH44ORFUP |
35 | site-specific DNA-methyltransferase | |||
39 | Laminin subunit alpha-2 precursor | |||
41 | R | HpyMM06XP (99% identity) | TCNNGA | HpyKH44ORFEP |
42 | M | M.HpyKH31ORFJP (98% identity) | TCNNGA | M.HpyKH44ORFEP |
43 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
48 | serine acetyltransferase | |||
50 | R | HpyKH3ORFSP (92% identity) | HpyKH44ORFTP | |
55 | M | M.HpyMM04I (96% identity) | M.HpyKH44ORFTP | |
56 | HAD family hydrolase | |||
48 | outer membrane protein | |||
??? | R | HpyU422IVP (96% identity) | CCATC | HpyKH44ORFPP |
52 | M | M1.HpySP503III (93% identity) | CCATC | M1.HpyKH44ORFPP |
53 | M | M2.HpyP105III (98% identity) | CCATC | M2.HpyKH44ORFPP |
54 | YjgP/YjgQ family permease | |||
74 | outer membrane protein | |||
??? | RM | HpyFD662ORF2380P (86% identity) | HpyKH44ORFSP | |
79 | -binding protein | |||
93 | ComF family protein | |||
94 | RM | HpyT001ORF7155P (95% identity) | HpyKH44ORFOP | |
95 | S | S.HpyFD535ORFI1P (95% identity) | S.HpyKH44ORFOP | |
96 | DNA polymerase I | |||
148 | alpha-1,2-fucosyltransferase | |||
149 | M | M.HpyI016VII (96% identity) | GATC | M.HpyKH44ORFDP |
151 | 337 aa hypothetical protein | |||
168 | 30S ribosomal protein S12 methylthiotransferase RimO | |||
169 | M | M2.HpyKG9ORF3535P (98% identity) | M1.HpyKH44ORFLP | |
170 | M | M1.HpyPU007ORF3405P (92% identity) | M2.HpyKH44ORFLP | |
??? | R | HpyME46ORF3490P (92% identity) | HpyKH44ORFLP | |
174 | 74 aa hypothetical protein HMPREF1403_01624 | |||
159 | uncharacterized protein | |||
160 | M | M.HpyKH39ORFEP (99% identity) | CTNAG | M.HpyKH44ORFAP |
161 | R | HpyKH15ORFAP (97% identity) | CTNAG | HpyKH44ORFAP |
162 | 3QBU_A Chain A, Crystal Structure Of Putative Peptidoglycan Deactelyase From Helicobacter Pylori | |||
220 | sodium/proline symporter | |||
221 | M | M.HpyGRE046V (98% identity) | CCTTC | M.HpyKH44ORFJP |
222 | R | HpyU311VIP (97% identity) | CCTTC | HpyKH44ORFJP |
223 | restriction endonuclease | |||
222 | 420 aa hypothetical protein | |||
223 | R | HpyGE19IVP (89% identity) | CCTC | HpyKH44ORFKP |
224 | DNA methyltransferase | |||
225 | M | M2.HpyKG4VIP (99% identity) | CCTC | M2.HpyKH44ORFKP |
227 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
236 | chaperone protein ClpB | |||
239 | M | M.HpyKH40ORFBP (99% identity) | CCGG | M.HpyKH44ORFBP |
240 | R | HpyKH16ORFOP (98% identity) | CCGG | HpyKH44ORFBP |
241 | DNA -methyltransferase | |||
240 | endonuclease MjaVIP | |||
241 | M | M.HpyMM01ORF1255P (86% identity) | M.HpyKH44ORFCP | |
242 | exodeoxyribonuclease VII large subunit | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
17 | ATP-dependent DNA helicase | |||
??? | M | M.HpyKH26ORFMP (96% identity) | M.HpyKH44ORFQP | |
21 | R | Hpy2099ORF7615P (95% identity) | HpyKH44ORFQP | |
24 | 95 aa hypothetical protein | |||
34 | DUF1887 family protein | |||
35 | M | M.Hpyfe78ORF7135P (94% identity) | M.HpyKH44ORFVP | |
36 | R | HpyFD703ORF7960P (94% identity) | HpyKH44ORFVP | |
38 | 66 aa hypothetical protein | |||
54 | DNA/RNA non-specific endonuclease | |||
55 | M | M.HpyMM02ORF6480P (95% identity) | M.HpyKH44ORFGP | |
56 | R | HpyKH34ORFKP (92% identity) | HpyKH44ORFGP | |
57 | biotin synthase |