Escherichia coli NCTC9008 |
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Putative Escherichia coli NCTC9008 RM systems
Ref:
REBASE ref # 22501
Complete sequence: 4,757,340 bp
GenBank #: LR134236
REBASE acronym: Eco9008
Org_num: 32336
All begin NCTC9008_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1271 | antitoxin of P1 addiction system | |||
| 1272 | M | M.Eco6E9ORF1020P (100% identity) | M.Eco9008ORF1272P | |
| 1273 | S | S.EcoXH988ORF23830P (88% identity) | S.Eco9008ORF1272P | |
| 1274 | R | EcoWW2ORF24545P (99% identity) | Eco9008ORF1272P | |
| 1275 | IS1 transposase | |||
| ??? | restriction endonuclease | |||
| 4009 | M | M.SflSTLE3ORF19325P (100% identity) | M.Eco9008ORF4009P | |
| 4010 | S | S.EcoS88ORF4968P (28% identity) | S1.Eco9008ORF4009P | |
| 4011 | S | S.SflSTLE3ORF19325P (71% identity) | S2.Eco9008ORF4009P | |
| 4012 | R | SflSTLE3ORF19325P (100% identity) | Eco9008ORF4009P | |
| 4014 | protein YjiS | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 337 | DamX protein | |||
| 338 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco9008DamP |
| 339 | ribulose-phosphate 3-epimerase | |||
| 465 | membrane protein | |||
| 466 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco9008ORF466P |
| 467 | DNA-binding protein Fis | |||
| 1699 | Replication gene A protein (GpA) | |||
| 1700 | R | EcoR7ORF1275P (99% identity) | TGGCCA | Eco9008ORF1701P |
| 1701 | M | M.Ecoww7ORF20P (100% identity) | TGGCCA | M.Eco9008ORF1701P |
| 1702 | phage capsid protein | |||
| 1900 | phosphohydrolase | |||
| 1901 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.Eco9008DcmP |
| 1902 | V | V.SflSTLE3DcmP (100% identity) | V.Eco9008DcmP | |
| 1903 | DMT superfamily transporter inner | |||
| 3041 | replication protein for prophage | |||
| 3042 | M | M.SflLIN17ORF14475P (100% identity) | GATC | M.Eco9008ORF3042P |
| 3043 | TraR/DksA family transcriptional regulator | |||
| 3169 | protein ninx | |||
| 3170 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco9008ORF3170P |
| 3171 | recombination protein ninB from phage origin | |||