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Putative Helicobacter pylori KH32 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,611,728 bp
GenBank #: PHLT00000000 (NZ_PHLT00000000)
REBASE acronym: HpyKH32
Org_num: 32010
All begin ORF_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
1 | S | S.Hpy75ORFDP (96% identity) | S.HpyKH32ORFMP | |
2 | R | HpyKH7ORFRP (96% identity) | HpyKH32ORFMP | |
5 | hydroxyethylthiazole kinase | |||
1 | S | S.HpyUM067ORF2910P (98% identity) | S.HpyKH32ORFYP | |
2 | M | M.HpyF007ORF2325P (95% identity) | M.HpyKH32ORFYP | |
??? | R | HpyHORF438P (88% identity) | HpyKH32ORFYP | |
5 | 631 aa hypothetical protein U063_1207 | |||
50 | DNA cytosine methyltransferase | |||
??? | M | M.HpyKH36ORFQP (96% identity) | M.HpyKH32ORFTP | |
88 | cadmium-translocating P-type ATPase | |||
92 | S | S.HpyDO1ORF2750P (90% identity) | S.HpyKH32ORFNP | |
93 | outer membrane beta-barrel protein HofF | |||
233 | M48 family peptidase | |||
236 | R | HpyMA02ORF7510P (94% identity) | HpyKH32ORFKP | |
237 | M | M.HpyKH37ORFMP (97% identity) | M.HpyKH32ORFKP | |
238 | 258 aa unknown | |||
239 | S | S.HpyDU15ORF7105P (96% identity) | S.HpyKH32ORFKP | |
241 | glutamine--fructose-6-phosphate transaminase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
1 | adenine specific DNA methyltransferase 2 domain protein | |||
3 | M | M.HpyMM03IX (98% identity) | GANTC | M.HpyKH32ORFLP |
4 | R | HpyFD535ORFMP (97% identity) | GANTC | HpyKH32ORFLP |
5 | adenine specific DNA methyltransferase 2 domain protein | |||
1 | M | M2.HpyKH32ORFJP (100% identity) | GATC | M1.HpyKH32ORFJP |
2 | M | M1.HpyKH32ORFJP (100% identity) | GATC | M2.HpyKH32ORFJP |
3 | R | HpyFD719ORF765P (97% identity) | GATC | HpyKH32ORFJP |
4 | 2H1Y_A Chain A, Crystal Structure Of Malonyl-coa:acyl Carrier Protein Transacylase From Helicobacter Pylori | |||
5 | glycosyltransferase family 8 protein | |||
6 | M | M.HpyMA04VI (99% identity) | GAATTC | M.HpyKH32ORFXP |
??? | R | HpyT001ORF6855P (86% identity) | GAATTC | HpyKH32ORFXP |
9 | UDP-N-acetylmuramate dehydrogenase | |||
5 | 76 aa hypothetical protein SE87_02515 | |||
6 | R | 198 aa hypothetical protein | ACGT | HpyKH32ORFZP |
7 | M | M.HpyKH11ORFD1P (97% identity) | ACGT | M.HpyKH32ORFZP |
8 | GIY-YIG nuclease family protein | |||
5 | 144 aa hypothetical protein HMPREF1427_00277 | |||
6 | M | M.HpyCOL302XVIII (97% identity) | GCGC | M.HpyKH32ORFIP |
7 | flagellar biosynthesis anti-sigma factor FlgM | |||
7 | DNA cytosine methyltransferase | |||
8 | R | HpyKH37ORFD1P (97% identity) | HpyKH32ORFA1P | |
10 | M | M.HpyKH43ORFC1P (98% identity) | M.HpyKH32ORFA1P | |
12 | 112 aa hypothetical protein | |||
15 | modification methylase VspI domain protein | |||
??? | M | M.Hpy5AEK1ORFRP (95% identity) | M.HpyKH32ORFB1P | |
19 | DNA topoisomerase subunit B | |||
21 | M | M.HpyKH45ORFJP (97% identity) | M.HpyKH32ORFHP | |
22 | R | HpyKH11ORFGP (94% identity) | HpyKH32ORFHP | |
23 | metalloendopeptidase like protein | |||
48 | 97 aa hypothetical protein 1_17C_ICEHptfs4b_14 | |||
49 | R | HpyOK304ORFWP (98% identity) | HpyKH32ORFSP | |
50 | M | M.HpyKH14ORFMP (99% identity) | M.HpyKH32ORFSP | |
51 | type I restriction-modification system subunit M | |||
39 | Laminin subunit alpha-2 precursor | |||
41 | R | HpyNP13XIIP (98% identity) | TCNNGA | HpyKH32ORFEP |
42 | M | M.HpyKG6XIII (99% identity) | TCNNGA | M.HpyKH32ORFEP |
43 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
41 | carboxylating nicotinate-nucleotide diphosphorylase | |||
??? | RM | HpyMM03ORF6570P (89% identity) | HpyKH32ORFWP | |
55 | HAD family hydrolase | |||
56 | M | M.HpyNCI14I (94% identity) | M.HpyKH32ORFFP | |
57 | 59 aa hypothetical protein | |||
67 | sodium/proline symporter | |||
68 | M | M.HpyUM114ORF1165P (78% identity) | CCTC | M1.HpyKH32ORFC1P |
70 | DNA methyltransferase | |||
130 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
131 | R | HpyPE106ORF4395P (96% identity) | GTNNAC | HpyKH32ORFGP |
132 | M | M.HpyMA02III (92% identity) | GTNNAC | M.HpyKH32ORFGP |
133 | ATP-dependent helicase | |||
221 | exodeoxyribonuclease VII large subunit | |||
222 | M | M.HpyFD719ORF1750P (91% identity) | M.HpyKH32ORFBP | |
223 | 64 aa hypothetical protein HMPREF1401_01153 | |||
223 | 64 aa hypothetical protein HMPREF1401_01153 | |||
224 | R | endonuclease MjaVIP | CCGG | HpyKH32ORFCP |
225 | M | M.HpyKG7IV (97% identity) | CCGG | M.HpyKH32ORFCP |
226 | chaperone protein ClpB | |||
226 | -binding protein | |||
227 | RM | DEAD/DEAH box helicase | HpyKH32ORFOAP | |
229 | RM | HpyKH36ORFXBP (76% identity) | HpyKH32ORFOBP | |
231 | outer membrane protein | |||
260 | 969 aa hypothetical protein | |||
262 | RM | Hpy13AEK8ORFE1P (90% identity) | HpyKH32ORFQP | |
263 | transcription termination/antitermination protein NusA | |||
297 | 3QBU_A Chain A, Crystal Structure Of Putative Peptidoglycan Deactelyase From Helicobacter Pylori | |||
298 | R | HpyGRE046VIP (86% identity) | CTNAG | HpyKH32ORFDP |
301 | M | M.HpyPU006VI (99% identity) | CTNAG | M.HpyKH32ORFDP |
302 | 125 aa hypothetical protein | |||
322 | ComF family protein | |||
324 | RM | HpyMA19ORF6905P (98% identity) | HpyKH32ORFUP | |
325 | S | S.HpyBR8ORF7075P (50% identity) | S1.HpyKH32ORFUP | |
327 | S | S2.HpyOK317ORFJP (92% identity) | S2.HpyKH32ORFUP | |
329 | DNA polymerase I | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
2 | biotin synthase | |||
4 | R | HpyKH31ORFWP (92% identity) | HpyKH32ORFRP | |
5 | M | M.HpyNP02ORF6555P (93% identity) | M.HpyKH32ORFRP | |
7 | DNA/RNA non-specific endonuclease | |||
23 | rod shape-determining MreC family protein | |||
??? | R | HpyMA04ORF5590P (91% identity) | HpyKH32ORFVP | |
??? | M | M.HpyIN8ORF6695P (94% identity) | M.HpyKH32ORFVP | |
30 | DNA-binding response regulator | |||
109 | 2-oxoglutarate:acceptor oxidoreductase | |||
110 | R | HpySP101ORF3570P (95% identity) | HpyKH32ORFAP | |
111 | M | M.HpyMA25ORF3775P (94% identity) | M.HpyKH32ORFAP | |
112 | 83 aa hypothetical protein HMPREF1403_00513 | |||
256 | ATP-dependent DNA helicase | |||
??? | M | M.HpyQ35ORFFP (96% identity) | M.HpyKH32ORFPP | |
260 | R | HpyKH7ORFJP (97% identity) | HpyKH32ORFPP | |
262 | 1259 aa hypothetical protein |