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Putative Helicobacter pylori KH29 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,605,007 bp
GenBank #: PHLW00000000 (NZ_PHLW00000000)
REBASE acronym: HpyKH29
Org_num: 31938
All begin ORF_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
18 | 631 aa hypothetical protein U063_1207 | |||
??? | R | HpyIN4ORF2145P (99% identity) | HpyKH29ORFZP | |
23 | M | M.HpyIN4ORF2145P (100% identity) | M.HpyKH29ORFZP | |
24 | S | S.HpyIN4ORF2145P (100% identity) | S.HpyKH29ORFZP | |
89 | hydroxyethylthiazole kinase | |||
90 | R | HpyIN4ORF3915P (100% identity) | HpyKH29ORFPP | |
93 | S | S.HpyIN4ORF3915P (100% identity) | S.HpyKH29ORFPP | |
??? | M | M.HpyIN4ORF3915P (94% identity) | M.HpyKH29ORFPP | |
98 | phosphatase PAP2 family protein | |||
301 | M48 family peptidase | |||
304 | R | HpyIN4XVP (99% identity) | HpyKH29ORFEP | |
305 | M | M.HpyIN4XV (100% identity) | M.HpyKH29ORFEP | |
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
6 | glycosyltransferase family 8 protein | |||
7 | M | M.HpyKH2ORFIP (100% identity) | GAATTC | M.HpyKH29ORFHP |
8 | R | HpyIN4VP (89% identity) | GAATTC | HpyKH29ORFHP |
9 | UDP-N-acetylmuramate dehydrogenase | |||
7 | 64 aa hypothetical protein | |||
8 | RM | HpyIN4ORF7025P (61% identity) | HpyKH29ORFUAP | |
11 | RM | class I SAM-dependent DNA methyltransferase | HpyKH29ORFUBP | |
12 | 95 aa hypothetical protein HMPREF1393_01376, partial | |||
7 | catalase family peroxidase | |||
10 | M | M.HpyIN4ORF2245P (100% identity) | M.HpyKH29ORFA1P | |
11 | GIY-YIG nuclease family protein | |||
10 | DNA cytosine methyltransferase | |||
11 | R | HpyNP13IIP (100% identity) | ACNGT | HpyKH29ORFB1P |
13 | M | M.HpyIN4II (100% identity) | ACNGT | M.HpyKH29ORFB1P |
14 | 108 aa hypothetical protein | |||
9 | 144 aa hypothetical protein HMPREF1427_00277 | |||
10 | M | M.HpyIN4XII (100% identity) | GCGC | M.HpyKH29ORFFP |
11 | flagellar biosynthesis anti-sigma factor FlgM | |||
17 | modification methylase VspI domain protein | |||
18 | M | M.HpyIN4XIII (100% identity) | ATTAAT | M.HpyKH29ORFC1P |
17 | adenine specific DNA methyltransferase | |||
??? | R | HpyIN4ORF6330P (100% identity) | HpyKH29ORFYP | |
20 | M | M.HpyPORF1318P (98% identity) | M.HpyKH29ORFYP | |
21 | carboxylating nicotinate-nucleotide diphosphorylase | |||
19 | ATP-dependent helicase | |||
21 | M | M.HpyIN4VII (93% identity) | GTNNAC | M.HpyKH29ORFGP |
22 | R | HpyIN4VIIP (100% identity) | GTNNAC | HpyKH29ORFGP |
23 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
32 | DNA-binding response regulator | |||
33 | R | HpyIN4IVP (100% identity) | GAAGA | HpyKH29ORFWP |
34 | M | M1.HpyIN4IV (100% identity) | GAAGA | M1.HpyKH29ORFWP |
??? | M | M2.HpyU204VIII (100% identity) | GAAGA | M2.HpyKH29ORFWP |
36 | DNA -methyltransferase | |||
40 | 5'-nucleotidase protein | |||
41 | M | M.HpyIN4ORF535P (99% identity) | M.HpyKH29ORFLP | |
42 | restriction endonuclease | |||
38 | outer membrane protein | |||
39 | R | HpyIN4ORF7120P (100% identity) | HpyKH29ORFSP | |
??? | M | M1.HpyIN4ORF7120P (55% identity) | M.HpyKH29ORFSP | |
42 | YjgP/YjgQ family permease | |||
36 | Laminin subunit alpha-2 precursor | |||
38 | R | HpyIN4XP (100% identity) | TCNNGA | HpyKH29ORFCP |
39 | M | M.HpyIN4X (100% identity) | TCNNGA | M.HpyKH29ORFCP |
40 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
48 | exodeoxyribonuclease VII large subunit | |||
49 | M | M.HpyIN4IX (98% identity) | TCGA | M.HpyKH29ORFMP |
50 | 204 aa hypothetical protein HMPREF1401_01153 | |||
50 | 204 aa hypothetical protein HMPREF1401_01153 | |||
51 | R | 184 aa hypothetical protein HMPREF1415_00409 | CCGG | HpyKH29ORFNP |
52 | M | M.HpyIN4III (100% identity) | CCGG | M.HpyKH29ORFNP |
53 | chaperone protein ClpB | |||
49 | outer membrane protein | |||
50 | M | M.HpyIN4ORF5380P (99% identity) | TCNGA | M.HpyKH29ORFAP |
51 | R | HpyF17I (73% identity) | TCNGA | HpyKH29ORFAP |
53 | 66 aa hypothetical protein | |||
54 | alpha-1,2-fucosyltransferase | |||
55 | M | M.HpyIN4VI (100% identity) | GATC | M.HpyKH29ORFKP |
??? | R | HpyKH2ORFKP (100% identity) | GATC | HpyKH29ORFKP |
59 | tetratricopeptide TPR_2 repeat protein | |||
85 | ComF family protein | |||
86 | RM | HpyIN4ORF7260P (100% identity) | HpyKH29ORFRP | |
87 | S | S.HpyIN4ORF7260P (52% identity) | S1.HpyKH29ORFRP | |
89 | S | S.HpyIN4ORF7260P (44% identity) | S2.HpyKH29ORFRP | |
90 | DNA polymerase I | |||
84 | outer membrane protein | |||
85 | RM | HpyIN4ORF3030P (56% identity) | HpyKH29ORFQBP | |
86 | RM | HpyIN4ORF3030P (42% identity) | HpyKH29ORFQAP | |
88 | -binding protein | |||
110 | HAD family hydrolase | |||
111 | M | M.HpyIN4I (100% identity) | CATG | M.HpyKH29ORFOP |
114 | R | HpyIN4IP (100% identity) | CATG | HpyKH29ORFOP |
117 | serine acetyltransferase | |||
121 | sodium/proline symporter | |||
122 | R | HpyKH2ORFMP (99% identity) | GTSAC | HpyKH29ORFIP |
123 | M | M.HpyKH2ORFMP (100% identity) | GTSAC | M.HpyKH29ORFIP |
124 | DNA cytosine methyltransferase | |||
123 | site-specific DNA-methyltransferase | |||
??? | R | HpyIN4ORF255P (99% identity) | HpyKH29ORFJP | |
??? | M | M2.HpyIN4ORF255P (100% identity) | M2.HpyKH29ORFJP | |
131 | M | M1.HpyIN4ORF255P (100% identity) | CCTC | M1.HpyKH29ORFJP |
133 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
162 | Translation elongation factor LepA | |||
164 | M | M.HpyUSU101ORF2045P (100% identity) | M.HpyKH29ORFBP | |
165 | 156 aa hypothetical protein HMPREF1411_00627 | |||
278 | anthranilate synthase component I TrpE domain protein | |||
279 | R | HpyIN4XIP (100% identity) | TGCA | HpyKH29ORFDP |
280 | M | M.HpyIN4XI (100% identity) | TGCA | M.HpyKH29ORFDP |
281 | 68 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
3 | 118 aa hypothetical protein | |||
4 | R | HpyIN4ORF7015P (93% identity) | HpyKH29ORFTP | |
7 | 64 aa hypothetical protein | |||
??? | DUF1887 family protein | |||
??? | M | M.HpyIN4ORF6410P (97% identity) | M.HpyKH29ORFXP | |
38 | R | HpyIN4ORF6410P (100% identity) | HpyKH29ORFXP | |
40 | 66 aa hypothetical protein | |||
55 | DNA/RNA non-specific endonuclease | |||
56 | M | M.HpyIN4ORF6470P (100% identity) | M.HpyKH29ORFVP | |
58 | R | HpyIN4ORF6470P (98% identity) | HpyKH29ORFVP | |
59 | biotin synthase |