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Putative Helicobacter pylori KH28 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,679,991 bp
GenBank #: PHLX00000000 (NZ_PHLX00000000)
REBASE acronym: HpyKH28
Org_num: 31937
All begin ORF_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
60 | type I restriction endonuclease | |||
??? | M | M.HpyIN3ORF4035P (100% identity) | M.HpyKH28ORFVP | |
63 | S | S.HpyIN3ORF4035P (100% identity) | S.HpyKH28ORFVP | |
64 | R | HpyIN3ORF4035P (96% identity) | HpyKH28ORFVP | |
67 | hydroxyethylthiazole kinase | |||
109 | M48 family peptidase | |||
112 | R | HpyIN3XIIP (99% identity) | HpyKH28ORFCP | |
113 | M | M.HpyIN3XII (100% identity) | M.HpyKH28ORFCP | |
165 | polyphosphate kinase 1 | |||
166 | S | S.HpyIN3VII (100% identity) | S.HpyKH28ORFAP | |
167 | M | M.HpyIN3VII (100% identity) | M.HpyKH28ORFAP | |
168 | R | HpyIN3VIIP (100% identity) | HpyKH28ORFAP | |
169 | 631 aa hypothetical protein U063_1207 | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
12 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
13 | R | HpyIN3XP (100% identity) | GTNNAC | HpyKH28ORFFP |
14 | M | M.HpyIN3X (93% identity) | GTNNAC | M.HpyKH28ORFFP |
16 | ATP-dependent helicase | |||
29 | 67 aa hypothetical protein | |||
30 | RM | HpyIN3ORF7520P (100% identity) | HpyKH28ORFUP | |
32 | DUF4065 domain-containing protein | |||
35 | flagellar biosynthesis anti-sigma factor FlgM | |||
36 | M | M.HpyIN3XV (98% identity) | M.HpyKH28ORFDP | |
37 | 144 aa hypothetical protein HMPREF1427_00277 | |||
38 | alpha-1,2-fucosyltransferase | |||
40 | M | M.HpyIN3IX (100% identity) | GATC | M.HpyKH28ORFMP |
??? | R | HpyIN3IXP (91% identity) | GATC | HpyKH28ORFMP |
44 | 2H1Y_A Chain A, Crystal Structure Of Malonyl-coa:acyl Carrier Protein Transacylase From Helicobacter Pylori | |||
54 | exodeoxyribonuclease VII large subunit | |||
55 | M | M.HpyNCI22IX (98% identity) | TCGA | M.HpyKH28ORFWP |
57 | endonuclease MjaVIP | |||
55 | DNA -methyltransferase | |||
57 | R | HpyIN3ORF1290P (86% identity) | CCGG | HpyKH28ORFXP |
58 | M | M.HpyIN3V (100% identity) | CCGG | M.HpyKH28ORFXP |
59 | chaperone protein ClpB | |||
54 | outer membrane protein | |||
56 | R | HpyIN3IVP (100% identity) | CCATC | HpyKH28ORFSP |
57 | M | M2.HpyIN3IV (93% identity) | CCATC | M1.HpyKH28ORFSP |
58 | M | M2.HpySW30VIII (100% identity) | CCATC | M2.HpyKH28ORFSP |
59 | YjgP/YjgQ family permease | |||
85 | elongation factor Ts | |||
87 | R | HpyIN3XIVP (100% identity) | TGCA | HpyKH28ORFBP |
89 | M | M.HpyIN3XIV (100% identity) | TGCA | M.HpyKH28ORFBP |
90 | 68 aa hypothetical protein | |||
76 | 457 aa hypothetical protein | |||
77 | RM | HpyIN3ORF3175P (78% identity) | HpyKH28ORFZBP | |
80 | RM | DEAD/DEAH box helicase | HpyKH28ORFZAP | |
81 | -binding protein | |||
81 | Laminin subunit alpha-2 precursor | |||
84 | R | HpyIN3XIP (100% identity) | TCNNGA | HpyKH28ORFEP |
85 | M | M.HpyIN3XI (100% identity) | TCNNGA | M.HpyKH28ORFEP |
86 | 177 aa hypothetical protein HMPREF1397_00627 | |||
113 | sodium/proline symporter | |||
114 | R | HpyIN3VIP (83% identity) | CCTC | HpyKH28ORFLP |
115 | M | M2.HpyIN3VIP (100% identity) | CCTC | M2.HpyKH28ORFLP |
116 | M | M1.HpyIN3VI (100% identity) | CCTC | M1.HpyKH28ORFLP |
120 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
100 | ComF family protein | |||
102 | RM | HpyKH1ORFMP (100% identity) | HpyKH28ORFRP | |
103 | S | S.HpyIN3ORF7285P (100% identity) | S.HpyKH28ORFRP | |
104 | DNA polymerase I | |||
105 | HAD family hydrolase | |||
106 | M | M.HpyIN3I (100% identity) | CATG | M.HpyKH28ORFKP |
??? | R | HpyIN3IP (100% identity) | CATG | HpyKH28ORFKP |
112 | serine acetyltransferase | |||
120 | metalloendopeptidase like protein | |||
??? | R | HpyIN3ORF2370P (94% identity) | GTAC | HpyKH28ORFQP |
124 | M | M.Hpy13AEK8ORFSP (97% identity) | GTAC | M.HpyKH28ORFQP |
125 | DNA topoisomerase subunit B | |||
147 | catalase family peroxidase | |||
149 | M | M.HpyIN3ORF2275P (74% identity) | M.HpyKH28ORFNP | |
150 | GIY-YIG nuclease family protein | |||
149 | DNA cytosine methyltransferase | |||
150 | R | HpyIN3IIP (100% identity) | ACNGT | HpyKH28ORFOP |
152 | M | M.HpyIN3II (100% identity) | ACNGT | M.HpyKH28ORFOP |
153 | 112 aa hypothetical protein | |||
157 | 264 aa hypothetical protein | |||
158 | M | M.HpyIN3III (100% identity) | ATTAAT | M.HpyKH28ORFPP |
336 | S41 family peptidase | |||
??? | R | HpyIN3ORF6635P (100% identity) | HpyKH28ORFIP | |
340 | M | M.HpyUM023ORF560P (98% identity) | M.HpyKH28ORFIP | |
341 | DNA methyltransferase | |||
340 | site-specific DNA-methyltransferase | |||
341 | RM | DNA methyltransferase | HpyKH28ORFJBP | |
342 | RM | HpyIN3ORF6640P (92% identity) | HpyKH28ORFJAP | |
343 | carboxylating nicotinate-nucleotide diphosphorylase | |||
354 | DNA-binding response regulator | |||
355 | R | HpyIN3VIIIP (100% identity) | GAAGA | HpyKH28ORFHP |
356 | M | M1.HpyIN3VIII (95% identity) | GAAGA | M1.HpyKH28ORFHP |
357 | M | M2.HpyMA17V (95% identity) | GAAGA | M2.HpyKH28ORFHP |
358 | restriction endonuclease subunit R | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
15 | 2-oxoglutarate:acceptor oxidoreductase | |||
16 | R | HpyIN3ORF2810P (100% identity) | HpyKH28ORFYP | |
??? | M | M.HpyIN3ORF2810P (100% identity) | M.HpyKH28ORFYP | |
20 | 81 aa hypothetical protein HMPREF1403_00513 | |||
21 | ATP-dependent DNA helicase | |||
??? | M | M.HpyIN3ORF7535P (100% identity) | M.HpyKH28ORFTP | |
26 | R | HpyIN3ORF7535P (100% identity) | HpyKH28ORFTP | |
28 | 723 aa hypothetical protein | |||
375 | DNA/RNA non-specific endonuclease | |||
376 | M | M.HpyIN3ORF6770P (100% identity) | M.HpyKH28ORFGP | |
377 | R | HpyIN3ORF6770P (95% identity) | HpyKH28ORFGP |