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Putative Helicobacter pylori KH8 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,643,985 bp
GenBank #: PHMQ00000000 (NZ_PHMQ00000000)
REBASE acronym: HpyKH8
Org_num: 31807
All begin ORF_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
40 | 85 aa hypothetical protein HMPREF1396_00896 | |||
41 | S | S.HpyKH13ORFEP (100% identity) | S.HpyKH8ORFA1P | |
42 | formyltetrahydrofolate deformylase | |||
98 | 678 aa hypothetical protein | |||
99 | S | restriction endonuclease | S1.HpyKH8ORFMP | |
100 | S | S.HpyKH21ORFJP (46% identity) | S2.HpyKH8ORFMP | |
101 | DNA polymerase I | |||
130 | LPP20 lipofamily protein | |||
131 | S | S.HpySP315XIV (95% identity) | S.HpyKH8ORFGP | |
132 | M | M.HpySP401ORF7275P (95% identity) | M.HpyKH8ORFGP | |
133 | R | HpyKH13ORFGP (95% identity) | HpyKH8ORFGP | |
134 | M48 family peptidase | |||
279 | polyphosphate kinase 1 | |||
280 | S | S.HpyKH13ORFNP (100% identity) | S.HpyKH8ORFQP | |
281 | M | M.HpyKH13ORFNP (99% identity) | M.HpyKH8ORFQP | |
??? | R | HpyKH13ORFNP (99% identity) | HpyKH8ORFQP | |
285 | 631 aa hypothetical protein U063_1207 | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
8 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
??? | M | M.HpyKH13ORFYP (100% identity) | M.HpyKH8ORFZP | |
11 | R | HpyKH13ORFYP (100% identity) | TCNNGA | HpyKH8ORFZP |
12 | Laminin subunit alpha-2 precursor | |||
9 | glycosyltransferase family 8 protein | |||
10 | M | M.HpyKH13ORFDP (100% identity) | GAATTC | M.HpyKH8ORFFP |
11 | R | HpyKH13ORFDP (99% identity) | GAATTC | HpyKH8ORFFP |
12 | UDP-N-acetylmuramate dehydrogenase | |||
6 | 144 aa hypothetical protein HMPREF1427_00277 | |||
7 | M | M.HpyKH13ORFJP (100% identity) | GCGC | M.HpyKH8ORFIP |
8 | flagellar biosynthesis anti-sigma factor FlgM | |||
7 | HrgA protein, partial | |||
9 | M | M.HpyT021IX (95% identity) | GATC | M.HpyKH8ORFAP |
10 | alpha-1,2-fucosyltransferase | |||
12 | S41 family peptidase | |||
??? | RM | HpyPE16ORF6835P (89% identity) | HpyKH8ORFC1P | |
18 | carboxylating nicotinate-nucleotide diphosphorylase | |||
23 | 968 aa hypothetical protein | |||
26 | RM | HpyKH13ORFQP (99% identity) | HpyKH8ORFPP | |
28 | 542 aa hypothetical protein HMPREF1411_00815 | |||
23 | -binding protein | |||
24 | RM | DEAD/DEAH box helicase | HpyKH8ORFUAP | |
27 | RM | restriction endonuclease | HpyKH8ORFUBP | |
28 | 449 aa hypothetical protein | |||
29 | DNA-binding response regulator | |||
30 | R | HpyKG8VP (98% identity) | GAAGA | HpyKH8ORFB1P |
31 | M | M2.HpyBS06ORF810P (97% identity) | GAAGA | M1.HpyKH8ORFB1P |
32 | M | M2.HpyU009V (95% identity) | GAAGA | M2.HpyKH8ORFB1P |
33 | DNA -methyltransferase | |||
45 | exodeoxyribonuclease VII large subunit | |||
46 | M | M.HpyKH6ORFXP (100% identity) | TCGA | M.HpyKH8ORFRP |
47 | 132 aa hypothetical protein HMPREF1392_01214 | |||
51 | outer membrane protein | |||
52 | M | M.HpyKH13ORFIP (100% identity) | TCNGA | M.HpyKH8ORFBP |
53 | R | HpyKH13ORFIP (100% identity) | TCNGA | HpyKH8ORFBP |
55 | phosphopentomutase | |||
47 | 132 aa hypothetical protein HMPREF1392_01214 | |||
48 | R | HpyP009IVP (95% identity) | CCGG | HpyKH8ORFSP |
49 | M | M.HpyKH6ORFWP (100% identity) | CCGG | M.HpyKH8ORFSP |
50 | chaperone protein ClpB | |||
52 | outer membrane protein | |||
53 | R | HpyKH13ORFSP (99% identity) | CCATC | HpyKH8ORFNP |
54 | M | M1.HpySP307III (93% identity) | CCATC | M1.HpyKH8ORFNP |
55 | M | M1.HpyKH13ORFSP (100% identity) | CCATC | M2.HpyKH8ORFNP |
56 | YjgP/YjgQ family permease | |||
50 | 3'-5' exonuclease | |||
51 | M | M.HpyP109IV (100% identity) | CCNNGG | M.HpyKH8ORFEP |
52 | R | HpySWT12ORF3110P (100% identity) | CCNNGG | HpyKH8ORFEP |
53 | 3'-5' exonuclease | |||
82 | 65 aa hypothetical protein | |||
??? | R | HpyKH26ORFB1P (100% identity) | HpyKH8ORFVP | |
86 | M | M.HpyMM10ORF2070P (89% identity) | M.HpyKH8ORFVP | |
87 | 109 aa hypothetical protein | |||
90 | modification methylase VspI domain protein | |||
91 | M | M.HpyKH6ORFB1P (98% identity) | ATTAAT | M.HpyKH8ORFWP |
97 | ComF family protein | |||
98 | RM | HpyKH13ORFTP (100% identity) | HpyKH8ORFLP | |
99 | restriction endonuclease | |||
115 | HAD family hydrolase | |||
116 | M | M.HpyKH13ORFHP (100% identity) | CATG | M.HpyKH8ORFCP |
117 | 59 aa hypothetical protein | |||
158 | 68 aa hypothetical protein | |||
159 | M | M.HpyKH6ORFJP (100% identity) | TGCA | M.HpyKH8ORFHP |
161 | R | HpyKH13ORFFP (100% identity) | TGCA | HpyKH8ORFHP |
163 | cytochrome c1 | |||
188 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
189 | R | HpyKH13ORFLP (100% identity) | GTNNAC | HpyKH8ORFDP |
190 | M | M.HpyKH13ORFLP (100% identity) | GTNNAC | M.HpyKH8ORFDP |
191 | ATP-dependent helicase | |||
303 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
304 | M | M1.HpyKH13ORFOP (100% identity) | CCTC | M1.HpyKH8ORFJP |
306 | M | M2.HpyKH13ORFOP (100% identity) | CCTC | M2.HpyKH8ORFJP |
307 | R | restriction endonuclease | CCTC | HpyKH8ORFJBP |
308 | transposase | |||
309 | 101 aa hypothetical protein | |||
310 | IS200/IS605 family transposase | |||
311 | R | HpyKH13ORFOAP (100% identity) | CCTC | HpyKH8ORFJAP |
312 | site-specific DNA-methyltransferase | |||
311 | DNA cytosine methyltransferase | |||
312 | M | M.HpyKH13ORFZP (100% identity) | GTSAC | M.HpyKH8ORFKP |
313 | R | HpyKH13ORFZP (100% identity) | GTSAC | HpyKH8ORFKP |
314 | sodium/proline symporter | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
5 | biotin synthase | |||
??? | R | HpyKH13ORFXP (93% identity) | HpyKH8ORFYP | |
9 | M | M.HpyKH13ORFXP (99% identity) | M.HpyKH8ORFYP | |
10 | 117 aa hypothetical protein | |||
14 | 2-oxoglutarate:acceptor oxidoreductase | |||
15 | R | HpyKH13ORFCP (98% identity) | HpyKH8ORFTP | |
??? | M | M.HpyBR3ORF3635P (98% identity) | M.HpyKH8ORFTP | |
18 | 88 aa hypothetical protein HMPREF1403_00513 | |||
19 | ATP-dependent DNA helicase | |||
??? | M | M.HpyME45ORF7220P (95% identity) | M.HpyKH8ORFOP | |
23 | R | HpyKH13ORFRP (99% identity) | HpyKH8ORFOP | |
26 | class I SAM-dependent DNA methyltransferase | |||
27 | rod shape-determining MreC family protein | |||
28 | R | HpyKH13ORFWP (99% identity) | HpyKH8ORFXP | |
??? | M | M.HpyPU004ORF6525P (63% identity) | M.HpyKH8ORFXP | |
35 | 254 aa hypothetical protein |