Salmonella enterica subsp. enterica serovar Typhimurium OLF-FSR1-STCopenhagen-52 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Typhimurium OLF-FSR1-STCopenhagen-52 RM systems
Ref: Duceppe,M.-O. et al. unpublished
REBASE ref # 27136
Contig set: 4,887,124 bp
GenBank #: PYUY00000000 (NZ_PYUY00000000)
REBASE acronym: SenC52
Org_num: 31140
All begin C5H98_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 23610 | endoribonuclease SymE | |||
| 23615 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenC52ORF23620P |
| 23620 | M | M.StyUK1II (100% identity) | GAGNNNNNNRTAYG | M.SenC52ORF23620P |
| 23625 | R | SenC56ORF23565P (100% identity) | GAGNNNNNNRTAYG | SenC52ORF23620P |
| 23630 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10435 | RusA family crossover junction | |||
| 10440 | M | M.StyUK1V (100% identity) | GATC | M.SenC52ORF10440P |
| 10445 | 174 aa hypothetical protein | |||
| 18255 | ribulose-phosphate 3-epimerase | |||
| 18260 | M | M.StyTDamP (100% identity) | GATC | M.SenC52DamP |
| 18265 | cell division protein DamX | |||
| 10185 | drug/metabolite exporter YedA | |||
| 10190 | V | V.StyUK1DcmP (100% identity) | V.SenC52DcmP | |
| 10195 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenC52DcmP |
| 10200 | phosphohydrolase | |||
| 17780 | Fis family transcriptional regulator | |||
| 17785 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenC52ORF17785P |
| 17790 | DUF2556 domain-containing protein | |||
| 24560 | 62 aa hypothetical protein | |||
| 24565 | M | M.StyUK1ORFAP (100% identity) | M.SenC52ORF24565P | |
| 24570 | 73 aa hypothetical protein | |||
| 23440 | 363 aa hypothetical protein | |||
| 23445 | RM | StyUK1IV (100% identity) | GATCAG | SenC52ORF23445P |
| 23450 | BREX system P-loop protein BrxC | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1595 | MFS transporter | |||
| 1600 | M | M.StyUK1I (100% identity) | CAGAG | M.SenC52ORF1600P |
| 1605 | R | StyUK1IP (99% identity) | CAGAG | SenC52ORF1600P |
| 1610 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 23625 | type I restriction-modification system | |||
| 23630 | R | StyUK1MrrP (100% identity) | SenC52MrrP | |
| 23635 | 95 aa hypothetical protein | |||