Streptococcus suis JSHA1003 |
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Putative Streptococcus suis JSHA1003 RM systems
Ref: Ni,Y. et al. unpublished
REBASE ref # 27342
Complete sequence: 2,229,183 bp
GenBank #: CP030125
REBASE acronym: Ssu1003
Org_num: 30549
All begin DP112_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3810 | tRNA uridine-5-carboxymethylaminomethyl(34) | |||
| 3815 | R | SsuS11ORF4455P (99% identity) | Ssu1003ORF3820P | |
| 3820 | M | M.SsuTRG6ORF4410P (99% identity) | M.Ssu1003ORF3820P | |
| 3825 | S | S1.SsuS11ORF4455P (99% identity) | S1.Ssu1003ORF3820P | |
| 3830 | S | S3.Ssu105ORF3865P (40% identity) | S2.Ssu1003ORF3820P | |
| 3835 | integrase | |||
| 3840 | S | S1.Ssu1251ORF4410P (87% identity) | S3.Ssu1003ORF3820P | |
| 3845 | ribose-5-phosphate isomerase RpiA | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2375 | valine--tRNA ligase | |||
| 2380 | M | M.Lla14B4II (47% identity) | M.Ssu1003ORF2380P | |
| 2385 | R | SmuUA159ORF290P (67% identity) | Ssu1003ORF2380P | |
| 2390 | 203 aa hypothetical protein | |||
| 2395 | HNH endonuclease | |||
| 2400 | M | M.Ssu12RC1ORF2355P (95% identity) | M.Ssu1003ORF2400P | |
| 2405 | histidine kinase | |||
| 2410 | 277 aa hypothetical protein | |||
| 2415 | M | M.SsuMA4ORFIP (99% identity) | M.Ssu1003ORF2415P | |
| 2420 | R | SsuF001ORF12450P (97% identity) | Ssu1003ORF2415P | |
| 2425 | MmcQ family protein | |||
| 5830 | 82 aa hypothetical protein | |||
| 5835 | M | M.SsucFJSM5ORF3055P (99% identity) | M1.Ssu1003ORF5835P | |
| 5840 | M | M1.SphSsUD1ORFBP (92% identity) | M2.Ssu1003ORF5835P | |
| 5845 | helix-turn-helix domain-containing protein | |||
| 6135 | 82 aa hypothetical protein | |||
| 6140 | M | M.Ssu67ORF5775P (99% identity) | M.Ssu1003ORF6140P | |
| 6145 | DNA modification methylase | |||
| 6140 | DNA (cytosine-5-)-methyltransferase | |||
| 6145 | M | M.SsucFJSM5ORF3040BP (100% identity) | M.Ssu1003ORF6145BP | |
| 6150 | M | M.SsucFJSM5ORF3040AP (99% identity) | M.Ssu1003ORF6145AP | |
| 6155 | helix-turn-helix domain-containing protein | |||
| 6225 | 276 aa hypothetical protein | |||
| 6230 | M | M.LciB742ORF655P (73% identity) | M.Ssu1003ORF6230P | |
| 6235 | helix-turn-helix transcriptional regulator | |||
| 9840 | 118 aa hypothetical protein | |||
| 9845 | M | M.SspHKU75ORF7565P (95% identity) | M.Ssu1003ORF9845P | |
| 9850 | DNA (cytosine-5-)-methyltransferase | |||
| 9845 | site-specific DNA-methyltransferase | |||
| 9850 | M | M.Sin395ORF791P (67% identity) | M.Ssu1003ORF9850P | |
| 9855 | site-specific DNA-methyltransferase | |||
| 9850 | DNA (cytosine-5-)-methyltransferase | |||
| 9855 | M | M.SsuSC183ORF6335P (100% identity) | M.Ssu1003ORF9855P | |
| 9860 | 59 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8055 | molybdenum ABC transporter ATP-binding protein | |||
| 8060 | R | Ssu6407ORF8675P (97% identity) | Ssu1003ORF8065P | |
| 8065 | M | M.SsuDNC15ORF7970P (97% identity) | M.Ssu1003ORF8065P | |
| 8070 | SAM-dependent methyltransferase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4910 | GMP synthase (glutamine-hydrolyzing) | |||
| 4915 | R | Ssu1081McrCP (99% identity) | Ssu1003McrCP | |
| 4920 | R | SsuSS389McrBP (99% identity) | Ssu1003McrBP | |
| 4925 | 262 aa hypothetical protein | |||