Escherichia coli DP254 |
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Putative Escherichia coli DP254 RM systems
Ref: Xu,A. et al. unpublished
REBASE ref # 27038
Contig set: 5,232,842 bp
GenBank #: PSNQ00000000 (NZ_PSNQ00000000)
REBASE acronym: EcoDP254
Org_num: 30184
All begin C4K41_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 21680 | restriction endonuclease | |||
| 21685 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoDP254ORF21685P |
| 21690 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoDP254ORF21685P |
| 21695 | R | EcoSF088ORF20515P (100% identity) | RTACNNNNGTG | EcoDP254ORF21685P |
| 21700 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 25640 | 73 aa hypothetical protein | |||
| 25660 | M | M.SboBSORF1444P (100% identity) | A | M.EcoDP254ORF25660P |
| 25665 | TrmB family transcriptional regulator | |||
| 25465 | ATP-binding protein | |||
| 25470 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M1.EcoDP254ORF25470P |
| 25475 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoDP254ORF25470P |
| 25480 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoDP254ORF25470P |
| 25485 | restriction endonuclease | |||
| 25320 | 73 aa hypothetical protein | |||
| 25325 | M | M.StyR64ORFAP (100% identity) | M.EcoDP254ORF25325P | |
| 25330 | 0 aa hypothetical protein | |||
| 80 | phosphohydrolase | |||
| 85 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.EcoDP254DcmP |
| 90 | V | V.SflC32DcmP (74% identity) | V.EcoDP254DcmP | |
| 95 | drug/metabolite exporter YedA | |||
| 22650 | 330 aa hypothetical protein | |||
| 22655 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoDP254ORF22655P |
| 22660 | LexA family transcriptional regulator | |||
| 22690 | 67 aa hypothetical protein | |||
| 22695 | M | M.Sso63633ORF22290P (100% identity) | M.EcoDP254ORF22695P | |
| 22700 | holin | |||
| 12025 | cell division protein DamX | |||
| 12030 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoDP254DamP |
| 12035 | ribulose-phosphate 3-epimerase | |||
| 4155 | Fis family transcriptional regulator | |||
| 4160 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoDP254ORF4160P |
| 4165 | DUF2556 domain-containing protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 21335 | DUF4102 domain-containing protein | |||
| 21340 | M | M.Sensp14178ORF9290P (100% identity) | M.EcoDP254ORF21340P | |
| 21345 | R | Sensp14178ORF9290P (100% identity) | EcoDP254ORF21340P | |
| 21350 | shufflon system plasmid conjugative transfer | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 25480 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 25485 | R | EcosS9McrCP (100% identity) | EcoDP254McrCP | |
| 25490 | R | EcosS3McrBP (100% identity) | EcoDP254McrBP | |
| 25495 | 60 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 25825 | NinE family protein | |||
| 25830 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoDP254ORF25830P |
| 25835 | recombination protein NinB | |||