Campylobacter coli JV20 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Campylobacter coli JV20 RM systems
Ref: Muzny,D. et al. unpublished
REBASE ref # 12340
Contig set: 1,678,593 bp
GenBank #: AEER00000000 (NZ_AEER00000000)
REBASE acronym: CcoJV20
Org_num: 29435
All begin HMPREF9399_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 861 | GroES-like protein | |||
| 862 | R | Cco735ORF8440P (100% identity) | GAANNNNNNNRTAG | CcoJV20ORF866P |
| 863 | 799 aa hypothetical protein | |||
| 864 | S | S.Cco735ORF8440P (100% identity) | GAANNNNNNNRTAG | S.CcoJV20ORF866P |
| 865 | Fic family protein | |||
| 866 | M | M.CcoS9ORF7930P (100% identity) | GAANNNNNNNRTAG | M.CcoJV20ORF866P |
| 867 | 200 aa hypothetical protein | |||
| 452 | succinyl-diaminopimelate desuccinylase | |||
| 453 | M | M.Cco735ORF2405P (100% identity) | M.CcoJV20ORF453P | |
| 454 | 241 aa hypothetical protein | |||
| 455 | 167 aa hypothetical protein | |||
| 456 | S | S.Cco735ORF2405P (100% identity) | S.CcoJV20ORF453P | |
| 457 | thiamine biosynthesis protein ThiS | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1281 | translation initiation factor IF-3 | |||
| 1282 | M | M.Ccos32805ORF3585P (100% identity) | RAATTY | M.CcoJV20ORF1282P |
| 1283 | N-acetyl-gamma-glutamyl-phosphate reductase | |||
| 1056 | 810 aa hypothetical protein | |||
| 1057 | RM | CcoNB04aORF195P (100% identity) | CcoJV20ORF1057P | |
| 1058 | 365 aa hypothetical protein | |||
| 447 | type II restriction-modification enzyme | |||
| 448 | RM | Cco11999ORF7570P (100% identity) | CcoJV20ORF448P | |
| 449 | type I restriction modification DNA specificity | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1350 | lipid-A-disaccharide synthase | |||
| 1351 | R | Cco735ORF6055P (100% identity) | CcoJV20ORF1353P | |
| 1352 | caspase domain protein | |||
| 1353 | M | M.Cco735ORF6055P (100% identity) | M.CcoJV20ORF1353P | |
| 1354 | metal cation transporter, ZIP family | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1200 | 95 aa hypothetical protein | |||
| 1201 | R | Cco735McrBP (99% identity) | CcoJV20McrBP | |
| 1202 | R | Ccos1875McrCP (100% identity) | CcoJV20McrCP | |
| 1203 | ABC 3 transport family protein | |||