Bifidobacterium species TRE 1 |
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Putative Bifidobacterium species TRE 1 RM systems
Ref: Mattarelli,P. et al. unpublished
REBASE ref # 26019
Contig set: 2,696,466 bp
GenBank #: PEBI00000000 (NZ_PEBI00000000)
REBASE acronym: BspTRE1
Org_num: 28278
All begin CS006_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 490 | 183 aa hypothetical protein | |||
| 495 | M | M.Bca2028BORF800P (37% identity) | M.BspTRE1ORF495P | |
| 500 | S | S.Bbi23969ORFDP (58% identity) | S.BspTRE1ORF495P | |
| 505 | R | Bbi23969ORFDP (74% identity) | BspTRE1ORF495P | |
| 510 | ABC transporter | |||
| 1385 | transcriptional regulator | |||
| 1390 | R | Bca819ORF4995P (88% identity) | BspTRE1ORF1395P | |
| 1395 | M | M.Bca819ORF4995P (89% identity) | M.BspTRE1ORF1395P | |
| 1400 | S | S.Bst23968ORF294P (73% identity) | S.BspTRE1ORF1395P | |
| 1405 | AAA family ATPase | |||
| 5670 | proline racemase | |||
| 5675 | M | M.BimTam1GORF1209P (81% identity) | M.BspTRE1ORF5675P | |
| 5680 | S | S.PmeNSYSUORF13235P (21% identity) | S.BspTRE1ORF5675P | |
| 5685 | R | Bha100202ORF1304P (64% identity) | BspTRE1ORF5675P | |
| 5690 | formate C-acetyltransferase/glycerol dehydratase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10135 | 591 aa hypothetical protein | |||
| 10140 | M | M.MbaWY83ORFDP (49% identity) | M.BspTRE1ORF10140P | |
| 10145 | DNA (cytosine-5-)-methyltransferase | |||
| 6865 | 215 aa hypothetical protein | |||
| 6870 | RM | Bca2028BORF164P (62% identity) | BspTRE1ORF6870P | |
| 6875 | 1243 aa hypothetical protein | |||
| 10140 | DNA (cytosine-5-)-methyltransferase | |||
| 10145 | M | M.Bga20093ORFAP (96% identity) | M.BspTRE1ORF10145P | |
| 10150 | R | BaliVS1ORF4865P (90% identity) | BspTRE1ORF10145P | |
| 10155 | ATPase | |||
| 2970 | 566 aa hypothetical protein | |||
| 2975 | R | R1.BloLC67ORFCP (34% identity) | BspTRE1ORF2975P | |
| 2980 | DNA (cytosine-5-)-methyltransferase | |||
| 2975 | restriction endonuclease | |||
| 2980 | M | M.Bsp0790ORF1920P (69% identity) | M.BspTRE1ORF2980P | |
| 2985 | R | BceTG16ORF6795P (46% identity) | BspTRE1ORF2980P | |
| 2990 | 398 aa hypothetical protein | |||
| 2995 | 255 aa hypothetical protein | |||
| 3000 | M | M.BloB05ORFCP (67% identity) | M.BspTRE1ORF3000P | |
| 3005 | R | Dsp107105ORF15895P (40% identity) | BspTRE1ORF3000P | |
| 3010 | DNA mismatch repair protein MutT | |||