Escherichia coli WCHEC025943 |
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Putative Escherichia coli WCHEC025943 RM systems
Ref: Long,H. et al. unpublished
REBASE ref # 26361
| Sequence length: | GenBank #: | |
| Chromosome: | 4,817,293 bp | CP027205 |
| plasmid p1_025943: | 95,895 bp | CP027199 |
| plasmid p2_025943: | 75,779 bp | CP027200 |
| plasmid pMCR1_025943: | 265,538 bp | CP027202 |
REBASE acronym: Eco25943
Org_num: 28610
All begin CXB56_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9425 | IS1 family transposase | |||
| 9430 | R | Sen12509ORF5865P (100% identity) | Eco25943ORF9440P | |
| 9435 | S | S.Sen12509ORF5865P (100% identity) | S.Eco25943ORF9440P | |
| 9440 | M | M.SenS688ORF13495P (100% identity) | M.Eco25943ORF9440P | |
| 9445 | IS3 family transposase | |||
| 18120 | transcription factor | |||
| 18125 | M | M.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | M.Eco25943ORF18125P |
| 18130 | S | S.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | S.Eco25943ORF18125P |
| 18135 | DUF4433 domain-containing protein | |||
| 18140 | Appr-1-p processing protein | |||
| 18145 | R | Sbo49812IP (100% identity) | YTCANNNNNNGTTY | Eco25943ORF18125P |
| 18150 | M48 family peptidase | |||
| 25570 | DUF262 domain-containing protein | |||
| 25575 | M | M.Cyo1ORFBP (98% identity) | M.Eco25943ORF25575P | |
| 25580 | S | S.Eho916ORF18625P (66% identity) | S.Eco25943ORF25575P | |
| 25585 | R | Efe1ORFEP (99% identity) | Eco25943ORF25575P | |
| 25590 | 112 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5390 | protein DamX | |||
| 5395 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco25943DamP |
| 5400 | ribulose-phosphate 3-epimerase | |||
| 6045 | DUF2556 domain-containing protein | |||
| 6050 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco25943ORF6050P |
| 6055 | Fis family transcriptional regulator | |||
| 10950 | recombination protein NinB | |||
| 10955 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco25943ORF10955P |
| 10960 | NinE family protein | |||
| 13180 | phosphohydrolase | |||
| 13185 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Eco25943DcmP |
| 13190 | V | V.SsoSE61DcmP (100% identity) | V.Eco25943DcmP | |
| 13195 | EamA family transporter | |||
| plasmid p1_025943 | ||||
| 535 | 63 aa hypothetical protein | |||
| 550 | M | M.SflFF3ORF25150P (100% identity) | M.Eco25943ORF550P | |
| 555 | recombination-associated protein RdgC | |||
| plasmid p2_025943 | ||||
| 950 | 73 aa hypothetical protein | |||
| 955 | M | M.SenBR027ORFEP (100% identity) | SAY | M.Eco25943ORF955P |
| 960 | 101 aa hypothetical protein | |||
| plasmid pMCR1_025943 | ||||
| 1765 | DUF1173 family protein | |||
| 1770 | M | M.YpsF1ORFCP (100% identity) | M.Eco25943ORF1770P | |
| 1775 | thermonuclease family protein | |||
| 2510 | 108 aa hypothetical protein | |||
| 2515 | M | M.YpsF1ORFBP (100% identity) | M.Eco25943ORF2515P | |
| 2520 | 202 aa hypothetical protein | |||
| 2620 | DNA-binding protein | |||
| 2625 | M | M.YpsF1ORFDP (100% identity) | M.Eco25943ORF2625P | |
| 2630 | 284 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17385 | isocitrate dehydrogenase | |||
| 17390 | R | EcosEC27McrCP (100% identity) | Eco25943McrCP | |
| 17395 | R | EcoteDMcrBP (100% identity) | Eco25943McrBP | |
| 17400 | recombinase family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19400 | replication endonuclease | |||
| 19405 | M | M.Sen663ORF16605P (100% identity) | GATC | M.Eco25943ORF19405P |
| 19410 | TraR/DksA family transcriptional regulator | |||