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Putative Helicobacter pylori RM systems
Ref: Noto,J.M. et al. Gut (2017) In press
REBASE ref # 26198
Complete sequence: 1,674,013 bp
GenBank #: CP024023
REBASE acronym: HpyD3c
Org_num: 27775
All begin CNX73_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
505 | formyltetrahydrofolate deformylase | |||
510 | S | S.HpyR3cORF510P (100% identity) | S.HpyD3cORF510P | |
515 | nickel transporter | |||
4780 | 0 aa hypothetical protein | |||
4785 | S | S.HpyR3cORF4785P (100% identity) | S.HpyD3cORF4785P | |
4790 | cadmium-translocating P-type ATPase | |||
5065 | hydroxyethylthiazole kinase | |||
5070 | R | HpyR3cORF5080P (100% identity) | HpyD3cORF5080P | |
5075 | S | S.HpyR3cORF5080P (100% identity) | S.HpyD3cORF5080P | |
5080 | M | M.HpyR3cORF5080P (100% identity) | M.HpyD3cORF5080P | |
5085 | DNA (cytosine-5-)-methyltransferase | |||
5355 | DUF115 domain-containing protein | |||
5360 | R | HpyR3cORF5365P (100% identity) | HpyD3cORF5365P | |
5365 | M | M.HpyR3cORF5365P (100% identity) | M.HpyD3cORF5365P | |
??? | S | S.HpyR3cORF5365P (100% identity) | S.HpyD3cORF5365P | |
5380 | RNA degradosome polyphosphate kinase | |||
8140 | M48 family peptidase | |||
8145 | R | HpyR3cORF8160P (100% identity) | HpyD3cORF8150P | |
8150 | M | M.HpyR3cORF8160P (100% identity) | M.HpyD3cORF8150P | |
??? | S | S.HpyR3cORF8160P (100% identity) | S.HpyD3cORF8150P | |
8165 | 0 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
50 | DEAD/DEAH box helicase | |||
55 | RM | HpyR3cORF55P (100% identity) | HpyD3cORF55P | |
60 | DUF4065 domain-containing protein | |||
135 | outer membrane protein | |||
140 | R | HpyR3cORF145P (100% identity) | CCATC | HpyD3cORF145P |
145 | M | M1.HpyR3cORF145P (100% identity) | CCATC | M1.HpyD3cORF145P |
150 | M | M2.HpyR3cORF145P (100% identity) | CCATC | M2.HpyD3cORF145P |
155 | YjgP/YjgQ family permease | |||
280 | ComF family protein | |||
285 | RM | HpyR3cORF285P (100% identity) | HpyD3cORF285P | |
??? | S | S.HpyR3cORF285P (100% identity) | S.HpyD3cORF285P | |
300 | DNA polymerase I | |||
1310 | serine acetyltransferase | |||
??? | R | HpyR3cORF1320P (100% identity) | CATG | HpyD3cORF1320P |
1320 | M | M.HpyR3cORF1320P (100% identity) | CATG | M.HpyD3cORF1320P |
1325 | HAD family hydrolase | |||
1500 | purine-nucleoside phosphorylase | |||
1505 | R | HpyU408XP (100% identity) | TCNGA | HpyD3cORF1510P |
1510 | M | M.HpyR3cORF1510P (100% identity) | TCNGA | M.HpyD3cORF1510P |
1515 | 69 aa hypothetical protein | |||
1795 | flagellar biosynthesis protein FlgM | |||
1800 | M | M.HpyR3cORF1800P (100% identity) | GCGC | M.HpyD3cORF1800P |
1805 | 144 aa hypothetical protein | |||
1985 | Laminin subunit alpha-2 precursor | |||
1990 | R | HpyR3cORF1995P (100% identity) | TCNNGA | HpyD3cORF1995P |
1995 | M | M.HpyR3cORF1995P (100% identity) | TCNNGA | M.HpyD3cORF1995P |
2000 | acetyl-CoA carboxylase biotin carboxylase | |||
3075 | ATP-dependent helicase | |||
3080 | M | M.HpyR3cORF3080P (100% identity) | GTNNAC | M.HpyD3cORF3080P |
3085 | R | HpyU437IXP (100% identity) | GTNNAC | HpyD3cORF3080P |
3090 | flagellar hook protein FlgE | |||
3310 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
3315 | M | M.HpyR3cORF3315P (100% identity) | GTAC | M.HpyD3cORF3315P |
3320 | R | HpyR3cORF3315P (100% identity) | GTAC | HpyD3cORF3315P |
3325 | M23 family peptidase | |||
4170 | (Fe-S)-binding protein | |||
4175 | RM | HpyR3cORF4175P (100% identity) | HpyD3cORF4175P | |
4180 | 0 aa hypothetical protein | |||
5080 | type I restriction-modification system subunit | |||
5085 | M | M.HpyR3cORF5085P (100% identity) | M.HpyD3cORF5085P | |
5090 | R | HpyR3cORF5085P (100% identity) | HpyD3cORF5085P | |
5095 | phosphatase PAP2 family protein | |||
5250 | hypothetical protein | |||
5255 | R | HpyR3cORF5260P (100% identity) | ACGT | HpyD3cORF5260P |
5260 | M | M.HpyR3cORF5260P (100% identity) | ACGT | M.HpyD3cORF5260P |
5265 | restriction endonuclease | |||
5260 | DNA (cytosine-5-)-methyltransferase | |||
5265 | R | HpyR3cORF5270P (100% identity) | ACNGT | HpyD3cORF5270P |
5270 | M | M.HpyR3cORF5270P (100% identity) | ACNGT | M.HpyD3cORF5270P |
5275 | translational GTPase TypA | |||
5280 | glycosyltransferase 9 family protein | |||
5285 | M | M.HpyU423II (100% identity) | ATTAAT | M.HpyD3cORF5285P |
5290 | outer membrane beta-barrel protein | |||
6215 | ATP-dependent chaperone ClpB | |||
6220 | M | M.HpyR3cORF6220P (100% identity) | CCGG | M.HpyD3cORF6220P |
6225 | R | HpyR3cORF6220P (100% identity) | CCGG | HpyD3cORF6220P |
6230 | hypothetical protein | |||
6230 | hypothetical protein | |||
6235 | M | M.HpyR3cORF6235P (100% identity) | TCGA | M.HpyD3cORF6235P |
6240 | exodeoxyribonuclease VII large subunit | |||
7060 | alpha-1,2-fucosyltransferase | |||
??? | M | M.HpyR3cORF7075P (100% identity) | M.HpyD3cORF7065P | |
7080 | [acyl-carrier-protein] S-malonyltransferase | |||
7270 | restriction endonuclease | |||
7275 | R | HpyR3cORF7290P (100% identity) | GTSAC | HpyD3cORF7280P |
7280 | M | M.HpyR3cORF7290P (100% identity) | GTSAC | M.HpyD3cORF7280P |
7285 | restriction endonuclease | |||
7280 | restriction endonuclease | |||
7285 | R | HpyR3cORF7300P (100% identity) | CCTC | HpyD3cORF7290P |
7290 | DNA (cytosine-5-)-methyltransferase | |||
7295 | M | M2.HpyR3cORF7300P (100% identity) | CCTC | M2.HpyD3cORF7290P |
7300 | agmatine deiminase | |||
7300 | agmatine deiminase | |||
7305 | RM | HpyR3cORF7315P (100% identity) | HpyD3cORF7305P | |
7310 | nicotinate-nucleotide diphosphorylase | |||
7505 | glycosyltransferase family 8 protein | |||
7510 | M | M.HpyR3cORF7520P (100% identity) | M.HpyD3cORF7510P | |
7515 | site-specific DNA-methyltransferase | |||
8050 | elongation factor Ts | |||
??? | R | HpyR3cORF8070P (100% identity) | TGCA | HpyD3cORF8060P |
8060 | M | M.HpyR3cORF8070P (100% identity) | TGCA | M.HpyD3cORF8060P |
8065 | 68 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
40 | ATP-dependent DNA helicase RecG | |||
45 | M | M.HpyR3cORF45P (100% identity) | M.HpyD3cORF45P | |
50 | R | HpyR3cORF45P (100% identity) | HpyD3cORF45P | |
55 | restriction endonuclease | |||
7360 | DNA-binding response regulator | |||
7365 | M | M.HpyR3cORF7375P (100% identity) | M.HpyD3cORF7365P | |
7370 | R | HpyR3cORF7375P (100% identity) | HpyD3cORF7365P | |
7375 | rod shape-determining protein MreC | |||
7425 | DNA/RNA non-specific endonuclease | |||
7430 | M | M.HpyR3cORF7440P (100% identity) | M.HpyD3cORF7430P | |
7435 | R | HpyR3cORF7440P (100% identity) | HpyD3cORF7430P | |
7440 | biotin synthase |