Escherichia coli SCEC020023 |
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Putative Escherichia coli SCEC020023 RM systems
Ref: Liu,L. et al. unpublished
REBASE ref # 25198
| Sequence length: | GenBank #: | |
| Chromosome: | 4,883,746 bp | CP025950 |
| plasmid p020023_6: | 12,819 bp | CP025946 |
| plasmid pRmtB_020023: | 73,313 bp | CP025949 |
REBASE acronym: Eco20023
Org_num: 27280
All begin C1A20_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4755 | IS3 family transposase | |||
| ??? | M | M.EcoS1720ORFBP (100% identity) | M.Eco20023ORF4765P | |
| 26765 | S | S.Sma854ORF28755P (8% identity) | S1.Eco20023ORF4765P | |
| 4770 | IS21 family transposase | |||
| 4775 | AAA family ATPase | |||
| 4780 | S | S.Kpnb12LORF3305P (81% identity) | S2.Eco20023ORF4765P | |
| 4785 | DDE-type integrase/transposase/recombinase | |||
| 4880 | IS5 family transposase | |||
| 4890 | R | EcosEC71ORF17675P (100% identity) | Eco20023ORF4900P | |
| 4895 | S | S.EcoFLI21ORF16100P (100% identity) | S.Eco20023ORF4900P | |
| 4900 | M | M.EcosEC71ORF17675P (100% identity) | M.Eco20023ORF4900P | |
| 4905 | GTPase family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2930 | cell division protein DamX | |||
| 2935 | M | adenine-specific DNA-methyltransferase | GATC | M.Eco20023DamP |
| 2940 | ribulose-phosphate 3-epimerase | |||
| 3605 | DUF2556 domain-containing protein | |||
| 3610 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco20023ORF3610P |
| 3615 | DNA-binding transcriptional regulator Fis | |||
| 11420 | phosphohydrolase | |||
| 11425 | M | M.EcosEC5DcmP (100% identity) | CCWGG | M.Eco20023DcmP |
| 11430 | V | V.EcosEC7DcmP (100% identity) | V.Eco20023DcmP | |
| 11435 | drug/metabolite exporter YedA | |||
| 20680 | zinc ribbon domain-containing protein | |||
| 20685 | M | M.EcosEC31ORF18555P (100% identity) | GGTACC | M.Eco20023ORF20685P |
| 20690 | tyrosine-type recombinase/integrase | |||
| 20915 | phage holin, lambda family | |||
| 20920 | M | M.EcoXD35ORF23445P (100% identity) | M.Eco20023ORF20920P | |
| 20925 | 67 aa hypothetical protein | |||
| plasmid p020023_6 | ||||
| 280 | Tn3-like element IS3000 family transposase | |||
| 285 | RM | EcoDY612ORF23470P (81% identity) | Eco20023ORF285P | |
| 290 | mobilization protein MobX | |||
| plasmid pRmtB_020023 | ||||
| 790 | 59 aa hypothetical protein | |||
| 795 | M | M.Xca80ORFEP (100% identity) | M.Eco20023ORF795P | |
| 800 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 27020 | copper resistance protein | |||
| 20755 | R | Ecop10BGmrSDP (100% identity) | Eco20023GmrSDP | |
| 20760 | integrase | |||