|
Putative Gut metagenome RM systems
Ref: Beaulaurier,J.A. et al. Nat. Biotechnol. (2017) In press
REBASE ref # 25194
GenBank #: PDYJ00000000
REBASE acronym: Gme92
Org_num: 27260
All begin ORF_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
1 | R | ChoHKU16ORF2931P (73% identity) | Gme92ORFG3P | |
8 | M | M.ChoHKU16ORF2931P (79% identity) | M.Gme92ORFG3P | |
13 | restriction endonuclease subunit S | |||
14 | S | S.Nsh22244ORF11120P (31% identity) | S.Gme92ORFG3P | |
15 | ImmA/IrrE family metallo-endopeptidase | |||
2 | R | Bxy2aORF47470P (55% identity) | Gme92ORFU5P | |
??? | M | M.Pdi574ORF8250P (90% identity) | M.Gme92ORFU5P | |
10 | 124 aa hypothetical protein PREVCOP_04449 | |||
1 | S | S2.Pin100764ORF8295P (20% identity) | S1.Gme92ORFJ3P | |
2 | S | S3.Gme92ORFC3P (53% identity) | S2.Gme92ORFJ3P | |
4 | Integrase/recombinase | |||
5 | S | S1.Pin100764ORF8295P (27% identity) | S3.Gme92ORFJ3P | |
6 | S | S1.Gme92ORFC3P (87% identity) | S4.Gme92ORFJ3P | |
8 | 59 aa hypothetical protein | |||
9 | DUF4357 domain-containing protein | |||
10 | 75 aa hypothetical protein | |||
11 | 59 aa hypothetical protein | |||
??? | M | M.Gme92ORFC3P (93% identity) | M.Gme92ORFJ3P | |
??? | R | Gme92ORFC3P (98% identity) | Gme92ORFJ3P | |
30 | 63 aa hypothetical protein | |||
33 | C | C.Gme92ORFZ2P (76% identity) | C.Gme92ORFJ3P | |
34 | DUF2807 domain-containing protein | |||
1 | R | helicase C-terminal domain protein | Gme92ORFA3P | |
2 | heme ABC transporter ATP-binding protein | |||
3 | RloB domain-containing protein | |||
4 | 138 aa hypothetical protein | |||
5 | M | M.LjoG2AI (100% identity) | M.Gme92ORFA3P | |
6 | S | S.LjoG2AI (65% identity) | S1.Gme92ORFA3P | |
7 | S | S.LjoG2AI (29% identity) | S2.Gme92ORFA3P | |
11 | S | S.Lin6629ORF9465P (12% identity) | S3.Gme92ORFA3P | |
12 | 115 aa hypothetical protein | |||
1 | 88 aa hypothetical protein | |||
??? | R | Gme92ORFT1P (97% identity) | Gme92ORFI3P | |
12 | M | type I restriction enzyme, R subunit | M.Gme92ORFI3P | |
14 | 65 aa hypothetical protein | |||
15 | 62 aa hypothetical protein | |||
16 | S | S1.Gme92ORFO3P (57% identity) | S1.Gme92ORFI3P | |
17 | S | S2.Gme92ORFO3P (80% identity) | S2.Gme92ORFI3P | |
19 | S | S5.Bfa554ORF12905P (28% identity) | S3.Gme92ORFI3P | |
23 | S | S3.Gme92ORFO3P (60% identity) | S4.Gme92ORFI3P | |
25 | 79 aa hypothetical protein | |||
1 | DUF4357 domain-containing protein | |||
2 | M | M.Gme92ORFC3P (91% identity) | M.Gme92ORFZ2P | |
5 | R | Gme92ORFC3P (96% identity) | Gme92ORFZ2P | |
11 | C | C.Gme92ORFJ3P (76% identity) | C.Gme92ORFZ2P | |
13 | DUF2807 domain-containing protein | |||
2 | 59 aa hypothetical protein | |||
4 | M | type I restriction-modification system subunit M | M.Gme92ORFL1P | |
7 | 64 aa hypothetical protein | |||
8 | R | type I restriction endonuclease subunit R | R1.Gme92ORFL1P | |
11 | R | type I restriction endonuclease subunit R | R2.Gme92ORFL1P | |
16 | R | Gme92ORFT1P (58% identity) | R3.Gme92ORFL1P | |
19 | 246 aa hypothetical protein | |||
2 | 330 aa hypothetical protein | |||
3 | S | S3.FpoC48PORF3475P (28% identity) | S1.Gme92ORFB3P | |
4 | 74 aa hypothetical protein | |||
5 | Transposase, IS4 family | |||
6 | 140 aa hypothetical protein ACM15_26545 | |||
7 | 237 aa unknown | |||
8 | 444 aa hypothetical protein | |||
9 | 120 aa hypothetical protein | |||
10 | Transposase, IS4 family | |||
11 | 237 aa unknown | |||
12 | 140 aa hypothetical protein ACM15_26545 | |||
13 | S | S3.BthDOT2ORF16445P (35% identity) | S2.Gme92ORFB3P | |
16 | S | S2.Bsp3716PORF21890P (66% identity) | S3.Gme92ORFB3P | |
18 | 135 aa hypothetical protein | |||
19 | toxin Fic | |||
20 | 100 aa hypothetical protein | |||
21 | M | M.AspE39ORF6975P (71% identity) | M.Gme92ORFB3P | |
??? | R | Mba108610ORFMP (84% identity) | Gme92ORFB3P | |
30 | C | C.Pin100764ORF8295P (56% identity) | C.Gme92ORFB3P | |
33 | 82 aa hypothetical protein | |||
7 | 162 aa hypothetical protein | |||
8 | S | S1.Gme92ORFO3P (48% identity) | S.Gme92ORFT1P | |
10 | 74 aa hypothetical protein | |||
11 | 192 aa hypothetical protein | |||
12 | type I restriction modification DNA specificity domain protein | |||
??? | M | hypothetical protein | M.Gme92ORFT1P | |
25 | R | Gme92ORFO3P (99% identity) | Gme92ORFT1P | |
31 | 246 aa hypothetical protein | |||
7 | 400 aa hypothetical protein | |||
8 | M | M.CspGD3ORFEP (55% identity) | M.Gme92ORFR5P | |
10 | 108 aa hypothetical protein | |||
11 | S | S.PmeBin89ORFFP (21% identity) | S.Gme92ORFR5P | |
8 | Uncharacterized protein F082_1839 | |||
10 | S | S1.Gme92ORFI3P (57% identity) | S1.Gme92ORFO3P | |
11 | S | S2.Gme92ORFI3P (80% identity) | S2.Gme92ORFO3P | |
12 | S | S4.Gme92ORFI3P (60% identity) | S3.Gme92ORFO3P | |
14 | 67 aa hypothetical protein | |||
15 | 61 aa hypothetical protein | |||
16 | 87 aa hypothetical protein | |||
17 | S | S1.Pvu3C24ORF1473P (36% identity) | S4.Gme92ORFO3P | |
18 | M | type I restriction enzyme, R subunit | M.Gme92ORFO3P | |
??? | R | Gme92ORFT1P (99% identity) | Gme92ORFO3P | |
28 | 80 aa hypothetical protein | |||
7 | cell division protein Fic | |||
8 | S | type I restriction endonuclease S subunit | S1.Gme92ORFK4P | |
10 | S | S2.Lmu141ORF8875P (14% identity) | S2.Gme92ORFK4P | |
11 | S | S.BspABP14ORF24785P (24% identity) | S3.Gme92ORFK4P | |
12 | M | M.Lmu141ORF1270P (98% identity) | M.Gme92ORFK4P | |
14 | S | restriction endonuclease subunit S | S4.Gme92ORFK4P | |
15 | IS256, transposase | |||
24 | 63 aa hypothetical protein | |||
25 | S | S4.Gme92ORFJ3P (87% identity) | S1.Gme92ORFC3P | |
27 | S | S1.Pin100764ORF8295P (36% identity) | S2.Gme92ORFC3P | |
29 | Integrase/recombinase | |||
30 | S | S2.Gme92ORFJ3P (53% identity) | S3.Gme92ORFC3P | |
32 | DUF4357 domain-containing protein | |||
33 | M | M.Pin100764ORF8295P (93% identity) | M.Gme92ORFC3P | |
36 | R | Pin100764ORF8295P (98% identity) | Gme92ORFC3P | |
42 | XRE family transcriptional regulator | |||
18 | 156 aa hypothetical protein | |||
??? | M | M.Bsa18170I (40% identity) | M.Gme92ORFS5P | |
36 | DEAD/DEAH box helicase | |||
42 | C | C.Gme92ORFJ3P (76% identity) | C.Gme92ORFZ2P | |
44 | DUF2807 domain-containing protein | |||
41 | 63 aa hypothetical protein | |||
42 | S | S4.Gme92ORFJ3P (87% identity) | S1.Gme92ORFC3P | |
44 | Integrase/recombinase | |||
45 | S | S1.Pin100764ORF8295P (36% identity) | S2.Gme92ORFC3P | |
47 | S | S2.Gme92ORFJ3P (53% identity) | S3.Gme92ORFC3P | |
49 | DUF4357 domain-containing protein | |||
50 | M | M.Pin100764ORF8295P (93% identity) | M.Gme92ORFC3P | |
??? | R | Pin100764ORF8295P (98% identity) | Gme92ORFC3P | |
59 | 95 aa hypothetical protein | |||
111 | 326 aa hypothetical protein | |||
113 | R | Amuk1990ORF5650P (69% identity) | Gme92ORFB4P | |
116 | S | S.PmeBin159ORFBP (70% identity) | S.Gme92ORFB4P | |
117 | M | M.Bfa1ORF5895P (81% identity) | M.Gme92ORFB4P | |
119 | uncharacterized protein | |||
148 | 82 aa hypothetical protein | |||
149 | M | M.MhiM3ORF390P (71% identity) | M.Gme92ORFP5P | |
151 | S | S.Hpa788ORF8285P (53% identity) | S.Gme92ORFP5P | |
152 | 181 aa hypothetical protein | |||
145 | adenosine monophosphate-protein transferase | |||
146 | S | S.TmusYL45ORF10535P (81% identity) | S.Gme92ORFN1P | |
149 | restriction endonuclease subunit S | |||
150 | M | M.TmusYL45ORF10535P (95% identity) | M.Gme92ORFN1P | |
152 | 460 aa hypothetical protein | |||
258 | site-specific recombinase, phage integrase family spiroforme DSM 1552] | |||
259 | R | TmusYL45ORF8960P (64% identity) | Gme92ORFF4CP | |
260 | 116 aa hypothetical protein | |||
261 | 603 aa hypothetical protein | |||
262 | R | TmusYL45ORF8960P (26% identity) | Gme92ORFF4BP | |
263 | R | TmusYL45ORF8960P (15% identity) | Gme92ORFF4AP | |
264 | S | restriction endonuclease subunit S | S1.Gme92ORFF4P | |
265 | S | S.TmusYL45ORF8960P (80% identity) | S2.Gme92ORFF4P | |
267 | M | M.TmusYL45ORF8960P (100% identity) | M.Gme92ORFF4P | |
268 | 86 aa hypothetical protein | |||
303 | 60 aa hypothetical protein | |||
305 | R | Mba13079ORFCP (90% identity) | Gme92ORFY2P | |
309 | M | M.Mba13079ORFCP (97% identity) | M.Gme92ORFY2P | |
312 | S | S2.Bce371ORF25400P (50% identity) | S1.Gme92ORFY2P | |
313 | S | S2.BceWH2ORF1017P (41% identity) | S2.Gme92ORFY2P | |
314 | S | S1.Bfr492ORF10300P (23% identity) | S3.Gme92ORFY2P | |
316 | S | S4.AspH24ORF3890P (58% identity) | S4.Gme92ORFY2P | |
317 | uncharacterized protein | |||
488 | ISAs1 family transposase | |||
492 | M | M.DspC9ORF11990P (97% identity) | M.Gme92ORFGP | |
495 | S | S2.DspB8ORF520P (54% identity) | S.Gme92ORFGP | |
497 | R | DspC9ORF11990P (100% identity) | Gme92ORFGP | |
500 | DUF3800 domain-containing protein | |||
1318 | galactoside O-acetyltransferase | |||
1322 | R | BdoJR05IP (82% identity) | Gme92ORFI5P | |
1325 | M | M.ScoH2497ORFDP (83% identity) | M.Gme92ORFI5P | |
1328 | S | S1.Ele395CORFAP (41% identity) | S1.Gme92ORFI5P | |
1329 | S | S.Pst1065ORF5245P (14% identity) | S2.Gme92ORFI5P | |
1331 | S | S1.BxyORF36350P (25% identity) | S3.Gme92ORFI5P | |
1332 | integrase/recombinase | |||
1457 | site-specific recombinase phage integrase family | |||
1458 | S | S4.Mba13079ORFCP (100% identity) | S1.Gme92ORFS3P | |
1460 | S | S3.Mba13079ORFCP (100% identity) | S2.Gme92ORFS3P | |
1461 | restriction endonuclease subunit S | |||
1462 | restriction endonuclease subunit S | |||
1463 | S | S1.Mba13079ORFCP (57% identity) | S3.Gme92ORFS3P | |
1465 | M | M.Mba13079ORFCP (100% identity) | M.Gme92ORFS3P | |
1467 | 232 aa hypothetical protein | |||
1468 | 134 aa hypothetical protein | |||
1469 | 65 aa hypothetical protein | |||
1471 | R | Mba13079ORFCP (99% identity) | Gme92ORFS3P | |
1473 | 68 aa hypothetical protein | |||
1521 | WYL domain-containing protein | |||
1523 | M | M.Pin100764ORF8125P (87% identity) | M.Gme92ORFR3P | |
1526 | S | S.ScoH2383ORFGP (40% identity) | S1.Gme92ORFR3P | |
1527 | S | S2.PmeBin22ORFCP (45% identity) | S2.Gme92ORFR3P | |
1528 | R | Pin100764ORF8125P (45% identity) | Gme92ORFR3P | |
1532 | unnamed protein product | |||
1601 | XRE family transcriptional regulator | |||
1602 | M | M.MbaX1ORFFP (47% identity) | M.Gme92ORFP3P | |
1604 | unnamed protein product | |||
1965 | tRNA -N6)-dimethylallyltransferase MiaA | |||
1969 | S | S2.PmeBin358ORFDP (36% identity) | S.Gme92ORFE5P | |
1970 | 86 aa hypothetical protein | |||
1972 | M | M.Pme43184ORF6750P (83% identity) | M.Gme92ORFE5P | |
1974 | XRE family transcriptional regulator | |||
3439 | endonuclease/exonuclease/phosphatase | |||
3442 | M | M.Amu26ORF2135P (100% identity) | M.Gme92ORFBP | |
3444 | S | S.Amu26ORF2135P (100% identity) | S.Gme92ORFBP | |
3446 | R | Amu26ORF2135P (100% identity) | Gme92ORFBP | |
3451 | 269 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
1 | 174 aa hypothetical protein | |||
??? | R | Psp1446ORF6360P (49% identity) | Gme92ORFH3P | |
8 | DNA -methyltransferase | |||
9 | M | M.Gme92ORFV4P (51% identity) | M.Gme92ORFH3P | |
10 | 170 aa hypothetical protein | |||
2 | R | dpmII restriction endonuclease | Gme92ORFL3P | |
5 | M | M1.MspA4ORF580P (76% identity) | M.Gme92ORFL3P | |
6 | 266 aa hypothetical protein | |||
1 | M | M1.LbaF0428ORF10590P (44% identity) | M.Gme92ORFD1P | |
3 | 62 aa hypothetical protein | |||
1 | M | DNA adenine methylase | M.Gme92ORFA2P | |
3 | tetrathionate reductase subunit TtrB | |||
??? | R | Lba6163ORF2606P (40% identity) | Gme92ORFL4P | |
??? | M | M.Aku3ORFAP (67% identity) | M.Gme92ORFL4P | |
8 | 103 aa hypothetical protein | |||
3 | 93 aa hypothetical protein | |||
4 | M | M.Gme92ORFV1P (93% identity) | M.Gme92ORFQ1P | |
6 | sigma-70 family RNA polymerase sigma factor | |||
1 | 186 aa hypothetical protein | |||
4 | V | V.Lmu147ORF10520P (99% identity) | V.Gme92ORFV5P | |
6 | R | Lmu147ORF10520P (98% identity) | R1.Gme92ORFV5P | |
7 | M | M.Lmu147ORF10520P (99% identity) | M.Gme92ORFV5P | |
8 | R | R2.LmuV10ORF1645P (68% identity) | R2.Gme92ORFV5P | |
9 | transposase | |||
6 | 63 aa hypothetical protein | |||
7 | M | M1.Cho381ORF64P (31% identity) | M.Gme92ORFN4P | |
??? | R | ChyCHY5ORF1163P (56% identity) | Gme92ORFN4P | |
10 | 116 aa hypothetical protein | |||
4 | 216 aa hypothetical protein | |||
6 | M | M.Gme92ORFL5P (64% identity) | M.Gme92ORFW5P | |
8 | 90 aa hypothetical protein | |||
9 | DNA -methyltransferase | |||
10 | R | Gme92ORFL5P (89% identity) | Gme92ORFW5P | |
11 | V | V.Gme92ORFL5P (100% identity) | V.Gme92ORFW5P | |
12 | 205 aa hypothetical protein | |||
5 | uncharacterized protein | |||
7 | V | V.Gme92ORFX3P (91% identity) | V.Gme92ORFQ5P | |
??? | M | M.Pbi727ORF8095P (63% identity) | M.Gme92ORFQ5P | |
12 | 236 aa hypothetical protein | |||
13 | 63 aa hypothetical protein | |||
14 | 63 aa hypothetical protein | |||
15 | R | Gme92ORFC5P (50% identity) | Gme92ORFQ5P | |
17 | 123 aa hypothetical protein | |||
16 | 76 aa hypothetical protein | |||
17 | M | M.MspA4ORF11145P (74% identity) | M.Gme92ORFO4P | |
19 | 370 aa hypothetical protein BHV69_07005 | |||
3 | 426 aa hypothetical protein LACJE0001_1431 | |||
4 | M | M.LdeNDORF1212P (49% identity) | M.Gme92ORFKP | |
6 | ATPase | |||
6 | 120 aa hypothetical protein | |||
8 | M | M.Gme92ORFUP (94% identity) | M.Gme92ORFC1P | |
9 | 123 aa hypothetical protein | |||
17 | 121 aa hypothetical protein | |||
19 | M | M.Gme92ORFW1P (60% identity) | M.Gme92ORFR1P | |
21 | 116 aa hypothetical protein | |||
28 | conjugative transposon TraK protein | |||
30 | M | M.Gme92ORFG5P (88% identity) | M.Gme92ORFB2P | |
32 | conjugative transposon protein TraJ | |||
9 | 562 aa hypothetical protein | |||
10 | M | M.EmuEM01ORF9520P (68% identity) | M.Gme92ORFM4P | |
11 | 200 aa hypothetical protein | |||
21 | radical SAM protein | |||
23 | M | M.Gme92ORFJ4P (52% identity) | M.Gme92ORFS1P | |
27 | 173 aa hypothetical protein | |||
11 | 112 aa hypothetical protein | |||
12 | M | M.Gme92ORFQ1P (93% identity) | M.Gme92ORFV1P | |
14 | 153 aa hypothetical protein | |||
17 | 142 aa hypothetical protein | |||
19 | R | PmeBin20ORFDP (70% identity) | Gme92ORFX1P | |
21 | M | M.PmeBin20ORFDP (53% identity) | M.Gme92ORFX1P | |
25 | 61 aa hypothetical protein | |||
21 | 68 aa hypothetical protein | |||
22 | R | Pin100764ORF9050AP (53% identity) | Gme92ORFFP | |
23 | M | M.Pin100764ORF9050P (90% identity) | M.Gme92ORFFP | |
26 | 204 aa hypothetical protein | |||
20 | 107 aa hypothetical protein | |||
21 | M | M.RhoDCMORFFP (71% identity) | M.Gme92ORFE3P | |
24 | 148 aa hypothetical protein | |||
25 | 176 aa hypothetical protein C810_01487 | |||
28 | M | M.Gme92ORFR1P (60% identity) | M.Gme92ORFW1P | |
30 | 143 aa hypothetical protein | |||
26 | 136 aa hypothetical protein | |||
28 | M | M.Pse14827ORF1420P (16% identity) | M.Gme92ORFU1P | |
29 | 69 aa hypothetical protein | |||
27 | 59 aa hypothetical protein | |||
29 | M | M.Vpa16ORF21300P (9% identity) | M.Gme92ORFF3P | |
32 | 98 aa hypothetical protein | |||
41 | conjugative transposon protein TraJ | |||
43 | M | M.Gme92ORFB6P (98% identity) | M.Gme92ORFA5P | |
44 | conjugative transposon TraK protein | |||
39 | adenine-specific methyltransferase EcoRI family protein | |||
40 | M | M.Gme92ORFXP (81% identity) | M.Gme92ORFH2P | |
43 | 115 aa hypothetical protein | |||
34 | 256 aa hypothetical protein B5F95_08860 | |||
35 | M | M.MbaX1ORFGP (99% identity) | M.Gme92ORFN3P | |
61 | 119 aa hypothetical protein BHV69_09435 | |||
64 | M | M.MbaX1ORFBP (100% identity) | M.Gme92ORFK3P | |
68 | 125 aa hypothetical protein | |||
25 | 108 aa hypothetical protein | |||
27 | M | M.PmeBin309ORFCP (74% identity) | M.Gme92ORFSP | |
30 | 69 aa hypothetical protein | |||
54 | 77 aa hypothetical protein | |||
??? | RM | TmuYL45ORFAP (99% identity) | Gme92ORFD3P | |
57 | recombinase family protein | |||
64 | 61 aa hypothetical protein | |||
66 | M | M.MspA4ORF10610P (73% identity) | M.Gme92ORFRP | |
67 | R | MspA4ORF10610P (84% identity) | Gme92ORFRP | |
68 | GMP synthase | |||
86 | 133 aa hypothetical protein | |||
88 | M | M.Mpe11571ORF2297P (33% identity) | M.Gme92ORFI4P | |
91 | cytosine-specific methyltransferase | |||
88 | adenine-specific DNA-methyltransferase | |||
91 | M | M.PmeBin239ORFAP (62% identity) | M.Gme92ORFJ4P | |
95 | 81 aa hypothetical protein Alfi_1855 | |||
109 | 265 aa hypothetical protein | |||
111 | M | M.Pme0054II (22% identity) | M.Gme92ORFY4P | |
113 | 265 aa hypothetical protein | |||
164 | 61 aa hypothetical protein | |||
165 | M | M.BunC07ORF3409P (79% identity) | M.Gme92ORFO1P | |
173 | 175 aa hypothetical protein | |||
114 | 101 aa hypothetical protein | |||
115 | M | DNA -methyltransferase | M.Gme92ORFZ4P | |
117 | 325 aa hypothetical protein | |||
107 | 107 aa hypothetical protein | |||
108 | M | M.PsaM36ORF2265P (39% identity) | M.Gme92ORFE4P | |
110 | PglZ domain-containing protein | |||
112 | 90 aa hypothetical protein | |||
113 | M | M.PcoORF4317P (56% identity) | M.Gme92ORFO5P | |
114 | hNH endonuclease domain protein | |||
133 | DUF3883 domain-containing protein | |||
134 | M | M2.Tsa32279ORF23400P (61% identity) | M1.Gme92ORFX4P | |
135 | M | M1.Tsa32279ORF23400P (65% identity) | M2.Gme92ORFX4P | |
137 | V | V.Mba13079ORFEP (67% identity) | V.Gme92ORFX4P | |
142 | 387 aa hypothetical protein | |||
90 | toxin-antitoxin system, antitoxin component, Xre family | |||
91 | M | M.Lje702ORF9915P (94% identity) | M.Gme92ORFG4P | |
94 | 80 aa hypothetical protein | |||
94 | 80 aa hypothetical protein | |||
??? | RM | LcrSI1ORFBP (64% identity) | Gme92ORFH4P | |
97 | S | S.Csp901ORF3415P (40% identity) | S.Gme92ORFH4P | |
98 | toxin | |||
191 | conjugative transposon TraK protein | |||
193 | M | M.Gme92ORFA5P (98% identity) | M.Gme92ORFB6P | |
195 | conjugative transposon protein TraJ | |||
207 | 309 aa hypothetical protein | |||
210 | M | M.Gme92ORFS2P (74% identity) | M.Gme92ORFLP | |
211 | bacteroides conjugative transposon TraN protein | |||
247 | 283 aa hypothetical protein HMPREF0127_00400 | |||
251 | M | M.PmeBin647ORFBP (100% identity) | M.Gme92ORFR4P | |
254 | 201 aa hypothetical protein | |||
240 | 109 aa hypothetical protein | |||
243 | M | M.Gme92ORFC1P (94% identity) | M.Gme92ORFUP | |
244 | 130 aa hypothetical protein | |||
311 | 282 aa hypothetical protein metaSSY_00700 | |||
313 | R | Gme92ORFQ5P (50% identity) | Gme92ORFC5P | |
315 | DNA cytosine methyltransferase | |||
313 | 597 aa hypothetical protein | |||
315 | M | M.Gme92ORFM5P (62% identity) | M.Gme92ORFD5P | |
316 | V | V.Gme92ORFX3P (94% identity) | V.Gme92ORFD5P | |
318 | uncharacterized protein | |||
247 | transposase, IS116/IS110/IS902 family | |||
250 | RM | Pmu20ORFDP (24% identity) | Gme92ORFN5P | |
252 | resolvase domain-containing protein | |||
421 | 78 aa hypothetical protein | |||
423 | M | M.MbaX1ORFBP (99% identity) | M.Gme92ORFK5P | |
426 | 317 aa hypothetical protein BHV69_09425 | |||
420 | 403 aa hypothetical protein | |||
422 | M | M.Sin14862ORF4460P (57% identity) | M.Gme92ORFZP | |
423 | DUF262 domain-containing protein | |||
422 | 351 aa hypothetical protein | |||
423 | R | Cfa33896ORF20860P (87% identity) | Gme92ORFA1P | |
424 | 118 aa hypothetical protein | |||
361 | 92 aa hypothetical protein | |||
362 | M | M.MspA4ORF6620P (100% identity) | M.Gme92ORFIP | |
365 | R | MspA4ORF6620P (100% identity) | Gme92ORFIP | |
366 | 183 aa hypothetical protein | |||
427 | nucleoside transporter | |||
429 | M | M.PhoHDD12ORF5910P (75% identity) | M.Gme92ORFC4P | |
430 | R | R2.ScoH2477ORFAP (69% identity) | Gme92ORFC4P | |
431 | 440 aa hypothetical protein BHV67_12975 | |||
436 | DNA helicase II | |||
438 | V | V.Gme92ORFD5P (94% identity) | V.Gme92ORFX3P | |
439 | M | M.Gme92ORFH5P (74% identity) | M.Gme92ORFX3P | |
442 | uncharacterized protein | |||
414 | 308 aa hypothetical protein | |||
416 | R | Fco185ORF680P (56% identity) | Gme92ORFPP | |
417 | M | M.Fco0236ORF10700P (68% identity) | M.Gme92ORFPP | |
418 | GMP synthase | |||
616 | phenylalanine--tRNA ligase beta subunit | |||
621 | R | Pdo17855ORF12370P (49% identity) | Gme92ORFD4P | |
622 | M | M.PmeBin14ORFAP (58% identity) | M.Gme92ORFD4P | |
623 | 61 aa hypothetical protein | |||
697 | HNH endonuclease | |||
698 | M | M.Gme92ORFH3P (51% identity) | M.Gme92ORFV4P | |
699 | 61 aa hypothetical protein | |||
563 | Uncharacterised protein | |||
??? | M | M.RanHXbORF1684P (39% identity) | M.Gme92ORFV2P | |
567 | uncharacterized protein | |||
697 | 79 aa hypothetical protein | |||
698 | M | M2.EsaS1I (40% identity) | M1.Gme92ORFX2P | |
702 | M | M.Pme760ORF3460P (86% identity) | M2.Gme92ORFX2P | |
703 | R | Pme0301ORF8975P (68% identity) | Gme92ORFX2P | |
704 | tyrosine type site-specific recombinase | |||
789 | ATP-binding protein | |||
790 | M | M.Bpy6294ORF1074P (48% identity) | M1.Gme92ORFB5P | |
791 | 153 aa hypothetical protein | |||
793 | M | 242 aa hypothetical protein | M2.Gme92ORFB5P | |
796 | 70 aa hypothetical protein | |||
784 | ATP-binding protein | |||
786 | S | S.Bth498ORF4455P (45% identity) | S.Gme92ORFY3P | |
787 | M | M.PcoInI (69% identity) | M.Gme92ORFY3P | |
794 | C | C.PmeBin645ORFBP (62% identity) | C.Gme92ORFY3P | |
795 | 256 aa hypothetical protein | |||
965 | 100 aa hypothetical protein | |||
966 | M | M.Mba13079ORFDP (86% identity) | M.Gme92ORFP4P | |
969 | 85 aa hypothetical protein | |||
953 | DNA-processing protein DprA | |||
955 | RM | Msa17ORFEP (79% identity) | Gme92ORFMP | |
962 | 64 aa hypothetical protein | |||
850 | HNH endonuclease | |||
851 | M | M.Gme92ORFD5P (62% identity) | M.Gme92ORFM5P | |
853 | uncharacterized protein BN707_02591 | |||
956 | IS30 family transposase | |||
957 | R | Pin100764ORF11980P (71% identity) | Gme92ORFY5P | |
960 | M | M.Pin100764ORF11980P (64% identity) | M.Gme92ORFY5P | |
963 | adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme /biotin synthase | |||
1392 | 124 aa hypothetical protein HMPREF1089_03223 bolteae 90B3] | |||
1395 | M | M2.Esp010ORF8775P (97% identity) | M.Gme92ORFZ5P | |
1398 | 241 aa hypothetical protein C804_05849 | |||
1395 | 189 aa hypothetical protein N510_01248 | |||
1398 | M | M.RspKB18ORF5275P (90% identity) | M.Gme92ORFA6P | |
1402 | 101 aa hypothetical protein | |||
1047 | DUF2971 domain-containing protein | |||
1048 | M | M.Gme92ORFW5P (64% identity) | M.Gme92ORFL5P | |
1050 | R | Gme92ORFW5P (89% identity) | Gme92ORFL5P | |
1051 | V | V.Gme92ORFW5P (100% identity) | V.Gme92ORFL5P | |
1052 | 205 aa hypothetical protein | |||
1011 | 167 aa unknown | |||
1014 | M | M.Bxy12C04ORF4451P (65% identity) | M.Gme92ORFT2P | |
1015 | two-component system sensor histidine kinase DcuS | |||
1016 | UDP-3-O-acyl-N-acetylglucosamine deacetylase | |||
1018 | V | V.Gme92ORFP2P (78% identity) | V.Gme92ORFT2P | |
1022 | 110 aa hypothetical protein | |||
1700 | peptide chain release factor N-glutamine methyltransferase | |||
1702 | V | M.Cae1ORF1821P (22% identity) | V.Gme92ORFN2P | |
1705 | M | M.PmeBin299ORFBP (61% identity) | M.Gme92ORFN2P | |
1709 | R | PmeBin299ORFBP (52% identity) | Gme92ORFN2P | |
1711 | threonylcarbamoyl-AMP synthase | |||
1251 | dNA binding domain excisionase family | |||
1252 | M | M.Mel2410ORF4345P (59% identity) | M.Gme92ORFQP | |
1253 | 73 aa hypothetical protein | |||
1435 | 121 aa hypothetical protein | |||
1437 | M | M.DspC9ORF14270P (85% identity) | M.Gme92ORFB1P | |
1439 | 73 aa hypothetical protein | |||
1263 | bacteroides conjugative transposon TraN protein | |||
1264 | M | M.Gme92ORFLP (74% identity) | M.Gme92ORFS2P | |
1267 | 196 aa hypothetical protein HMPREF1071_04290 | |||
1441 | 623 aa hypothetical protein B5F95_08860 | |||
1443 | M | M.MbaX1ORFGP (99% identity) | M.Gme92ORFN3P | |
1444 | 88 aa hypothetical protein | |||
1445 | V | V.MbaX1ORFGP (99% identity) | V.Gme92ORFN3P | |
1448 | 63 aa hypothetical protein | |||
1396 | CBS domain-containing protein | |||
1400 | R | ScoHDD05ORF4015P (70% identity) | Gme92ORFZ3P | |
??? | M | M.ScoH2489ORFGP (61% identity) | M.Gme92ORFZ3P | |
1404 | methionyl-tRNA formyltransferase | |||
2014 | 77 aa hypothetical protein | |||
2016 | M | M.Pco2419ORFGP (75% identity) | M.Gme92ORFM2P | |
2017 | R | Pco2419ORFHP (87% identity) | Gme92ORFM2P | |
2020 | 351 aa hypothetical protein | |||
1524 | AlwI family type II restriction endonuclease | |||
1526 | M | M.Gme92ORFX3P (74% identity) | M.Gme92ORFH5P | |
1527 | V | V.Gme92ORFP2P (51% identity) | V.Gme92ORFH5P | |
1529 | 377 aa hypothetical protein N184_37255 | |||
1738 | 167 aa hypothetical protein | |||
1741 | M | M.Pmu16608ORF2283P (58% identity) | M1.Gme92ORFU4P | |
1742 | R | Bsa288ORF9985P (57% identity) | Gme92ORFU4P | |
1743 | M | M.Nbr17716ORF7020P (57% identity) | M2.Gme92ORFU4P | |
1744 | 74 aa hypothetical protein | |||
1523 | 88 aa hypothetical protein | |||
1524 | RM | FtuFAIORF1196P (39% identity) | Gme92ORFQ2P | |
1528 | 71 aa hypothetical protein | |||
1618 | 311 aa hypothetical protein | |||
1622 | M | M.BthC24ORF5290P (84% identity) | M.Gme92ORFQ3P | |
1623 | 288 aa hypothetical protein HMPREF0127_00400 | |||
1573 | 133 aa hypothetical protein BHV69_02390 | |||
1576 | V | V.Mba13079ORFEP (92% identity) | V.Gme92ORFP2P | |
1579 | 60 aa hypothetical protein | |||
1580 | M | M2.Pdi615ORF8645P (64% identity) | M1.Gme92ORFP2P | |
1581 | R | Pmu16608ORF2285P (60% identity) | Gme92ORFP2P | |
1582 | M | M.Pmu16608ORF2285P (60% identity) | M2.Gme92ORFP2P | |
1583 | 400 aa hypothetical protein | |||
1886 | conjugative transposon TraK protein | |||
1888 | M | M.Gme92ORFB2P (88% identity) | M.Gme92ORFG5P | |
1892 | conjugative transposon protein TraJ | |||
1972 | uncharacterized protein | |||
1974 | C | C.Bba18169ORFBP (65% identity) | C.Gme92ORFF5P | |
1976 | 80 aa hypothetical protein | |||
3005 | 68 aa hypothetical protein | |||
3006 | V | V.Amu28ORF1940P (100% identity) | V.Gme92ORFAP | |
3008 | M | M.Amu28ORF1940P (99% identity) | M.Gme92ORFAP | |
3009 | 352 aa hypothetical protein | |||
2600 | 115 aa hypothetical protein | |||
2602 | M | M.Gme92ORFXP (81% identity) | M.Gme92ORFH2P | |
2605 | adenine-specific methyltransferase EcoRI family protein | |||
2348 | 107 aa hypothetical protein HMPREF9944_01421 | |||
2349 | M | M.MspH5ORF3920P (100% identity) | M.Gme92ORFHP | |
2350 | R | MspH5ORF3915P (99% identity) | Gme92ORFHP | |
2351 | aTPase AAA family | |||
2540 | restriction endonuclease | |||
2541 | M | M1.Pru23ORF361P (79% identity) | M1.Gme92ORFW3P | |
2542 | M | M2.Pru23ORF361P (63% identity) | M2.Gme92ORFW3P | |
2544 | 110 aa hypothetical protein | |||
4016 | recombinase family protein | |||
4020 | M | M1.Bma11591ORF788P (42% identity) | M1.Gme92ORFK2P | |
4025 | M | M2.Bap100238ORF1360P (41% identity) | M2.Gme92ORFK2P | |
4028 | RM | OscSK9K4ORF8740P (65% identity) | Gme92ORFK2P | |
4037 | 73 aa hypothetical protein | |||
3657 | 211 aa hypothetical protein | |||
3659 | M | M.SspP129ORF1047P (48% identity) | M.Gme92ORFJP | |
3660 | 85 aa hypothetical protein | |||
4529 | 59 aa hypothetical protein | |||
4530 | M | M1.OspMM35ORF13180P (96% identity) | M1.Gme92ORFJ1P | |
4532 | M | M2.OspMM35ORF13180P (93% identity) | M2.Gme92ORFJ1P | |
4533 | R | OspMM35ORF13180P (95% identity) | Gme92ORFJ1P | |
4535 | 719 aa hypothetical protein A2Y15_09070 | |||
4725 | 63 aa hypothetical protein | |||
4727 | M | M.Amu49ORF155P (98% identity) | M.Gme92ORFCP | |
4730 | 88 aa hypothetical protein | |||
4285 | AlwI family type II restriction endonuclease | |||
4287 | M | M1.Pas20707ORF756P (54% identity) | M.Gme92ORFWP | |
4290 | 126 aa hypothetical protein | |||
5137 | 196 aa hypothetical protein | |||
5139 | M | M.Amu001ORFFP (99% identity) | M.Gme92ORFDP | |
5142 | tyrosine recombinase | |||
4216 | conjugative transposon protein TraJ | |||
4219 | M | M.Gme92ORFT3P (98% identity) | M.Gme92ORFX5P | |
4223 | conjugative transposon TraK protein | |||
5668 | 383 aa hypothetical protein BHW66_00510 | |||
5672 | M | M1.Amu500bORF11060P (95% identity) | M1.Gme92ORFG1P | |
5679 | M | M2.Amu1616ORF11250P (99% identity) | M2.Gme92ORFG1P | |
5680 | RM | Amuk1990ORF11190P (96% identity) | Gme92ORFG1P | |
5684 | multidrug transporter NorM | |||
6562 | uncharacterized protein | |||
??? | M | M.AarGH2ORF17980P (66% identity) | M.Gme92ORFK1P | |
6567 | 136 aa hypothetical protein | |||
6568 | R | Cpe31886ORF4250P (40% identity) | R1.Gme92ORFK1P | |
6569 | R | Aha2789ORF3462P (54% identity) | R2.Gme92ORFK1P | |
6570 | V | very short patch repair endonuclease | V.Gme92ORFK1P | |
6572 | transposase | |||
5085 | 111 aa hypothetical protein | |||
5089 | V | uncharacterized protein | V.Gme92ORFC2P | |
5090 | 81 aa hypothetical protein | |||
5091 | DNA mismatch endonuclease vsr | |||
5092 | 96 aa hypothetical protein | |||
5093 | 409 aa hypothetical protein N184_37255 | |||
5094 | 144 aa hypothetical protein | |||
5095 | M | M2.MspH5ORF1395P (82% identity) | M1.Gme92ORFC2P | |
5096 | M | M1.MspH5ORF1395P (87% identity) | M2.Gme92ORFC2P | |
5098 | R | MspH5ORF1395P (27% identity) | Gme92ORFC2P | |
5102 | 777 aa hypothetical protein BHV69_02360 | |||
4231 | RNA polymerase sigma70 factor | |||
4233 | M | M.Bfr85BORF6625P (68% identity) | M.Gme92ORFNP | |
4234 | R | Pcl1C4ORF27660P (76% identity) | Gme92ORFNP | |
4235 | DUF362 domain-containing protein | |||
5933 | chromosome partitioning protein ParB | |||
5936 | M | M2.MspA4ORF14705P (78% identity) | M.Gme92ORFT4P | |
5938 | 143 aa hypothetical protein | |||
5965 | 77 aa hypothetical protein | |||
5966 | M | M.Bxy2aORF11400P (63% identity) | M.Gme92ORFS4P | |
5969 | 74 aa hypothetical protein | |||
5127 | conjugative transposon protein TraJ | |||
5130 | M | M.Gme92ORFX5P (98% identity) | M.Gme92ORFT3P | |
5134 | conjugative transposon TraK protein | |||
6625 | DUF262 domain-containing protein | |||
6627 | M | M.Gme92ORFH2P (81% identity) | M.Gme92ORFXP | |
6629 | 93 aa hypothetical protein | |||
7379 | 138 aa hypothetical protein | |||
7381 | M | M.MbaX1ORFHP (100% identity) | M.Gme92ORFYP | |
7385 | thymidylate synthase | |||
8981 | 306 aa hypothetical protein | |||
8982 | M | M.Nor29761ORF12155P (34% identity) | M.Gme92ORFE1P | |
8983 | 111 aa hypothetical protein | |||
9419 | 71 aa hypothetical protein | |||
9421 | M | M.Amu139ORF9790P (100% identity) | M.Gme92ORFEP | |
9426 | 82 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
14 | 70 aa hypothetical protein | |||
16 | M | M.Bba45ORF11665P (93% identity) | M.Gme92ORFC6P | |
18 | 77 aa hypothetical protein | |||
19 | 67 aa hypothetical protein | |||
??? | R | TmusYL45ORF7670P (93% identity) | Gme92ORFC6P | |
7 | ATP-binding protein | |||
10 | R | Gme92ORFJ5P (45% identity) | Gme92ORFT5P | |
13 | 238 aa hypothetical protein | |||
14 | M | M.Gme92ORFJ5P (91% identity) | M.Gme92ORFT5P | |
17 | 134 aa hypothetical protein | |||
31 | 262 aa hypothetical protein | |||
??? | M | M.AhaEHALORF11330P (58% identity) | M.Gme92ORFP1P | |
??? | R | Gme92ORFV3P (86% identity) | Gme92ORFP1P | |
44 | 127 aa hypothetical protein | |||
208 | 62 aa hypothetical protein | |||
209 | R | Bfr23ORF12585P (76% identity) | Gme92ORFW2P | |
214 | M | M.Bun3537ORF7810P (39% identity) | M.Gme92ORFW2P | |
217 | 82 aa hypothetical protein | |||
549 | 83 aa hypothetical protein | |||
??? | R | Gme92ORFR2P (73% identity) | Gme92ORFU2P | |
557 | M | M.Gme92ORFR2P (84% identity) | M.Gme92ORFU2P | |
558 | ATP-binding protein | |||
1354 | 121 aa hypothetical protein | |||
1357 | R | Gme92ORFT5P (45% identity) | Gme92ORFJ5P | |
1364 | DUF4276 domain-containing protein | |||
1365 | Predicted ATPase | |||
1366 | 140 aa hypothetical protein | |||
1367 | M | M.Gme92ORFT5P (91% identity) | M.Gme92ORFJ5P | |
1369 | 253 aa hypothetical protein | |||
1365 | XRE family transcriptional regulator | |||
1366 | R | Gme92ORFU2P (73% identity) | Gme92ORFR2P | |
??? | M | M.Gme92ORFU2P (84% identity) | M.Gme92ORFR2P | |
1370 | metallophosphoesterase | |||
1609 | IS481 family transposase | |||
1612 | R | GvaAMDORF1087P (16% identity) | Gme92ORFO2P | |
??? | M | M.PspE133ORF6140P (43% identity) | M.Gme92ORFO2P | |
1618 | 60 aa hypothetical protein | |||
2615 | 374 aa hypothetical protein | |||
2617 | R | Rho2517ORFBP (49% identity) | Gme92ORFL2P | |
??? | M | M.RtoL2ORF31440P (55% identity) | M.Gme92ORFL2P | |
2625 | ATP-dependent helicase | |||
2596 | 254 aa hypothetical protein BHW39_00915 | |||
2597 | M | M.Mhy10570ORF682P (48% identity) | M.Gme92ORFV3P | |
2600 | 69 aa hypothetical protein | |||
2601 | 65 aa hypothetical protein | |||
2602 | ATPase AAA | |||
2603 | R | Gme92ORFP1P (86% identity) | Gme92ORFV3P | |
2605 | Glycosyltransferase involved in cell wall biogenesis | |||
4075 | 68 aa hypothetical protein | |||
??? | M | M.Rsp7II (58% identity) | M.Gme92ORFG2P | |
4080 | ATPase AAA | |||
4081 | R | Gme92ORFV3P (84% identity) | Gme92ORFG2P | |
4087 | 208 aa hypothetical protein Barb6_03935 | |||
4944 | DUF4391 domain-containing protein | |||
4949 | M | M.DhaPCSSORF1637P (45% identity) | M.Gme92ORFJ2P | |
4952 | R | AspCBH1ORF5970P (64% identity) | Gme92ORFJ2P | |
4962 | 667 aa hypothetical protein PTH_2497 | |||
5160 | DEAD/DEAH box helicase | |||
5163 | R | CbaBL6ORF3087P (71% identity) | Gme92ORFI1P | |
5166 | M | M.AspLEO107ORF7655P (44% identity) | M.Gme92ORFI1P | |
5171 | AAA family ATPase | |||
5023 | 277 aa hypothetical protein | |||
5024 | M | M.Mma225ORF3270P (52% identity) | M.Gme92ORFE2P | |
5028 | DUF1016 domain-containing protein | |||
5029 | R | Gme92ORFI1P (53% identity) | Gme92ORFE2P | |
5034 | DUF4268 domain-containing protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
10 | Uncharacterised protein | |||
11 | R | Lmu361ORF2006P (100% identity) | Gme92ORFOP | |
12 | NUDIX domain-containing protein | |||
17 | 65 aa hypothetical protein | |||
18 | R | LjoG2AMrrP (100% identity) | Gme92MrrP | |
19 | 125 aa hypothetical protein | |||
52 | exodeoxyribonuclease III | |||
53 | R | LjoCH32ORFAP (99% identity) | Gme92ORFM1P | |
55 | 301 aa hypothetical protein HMPREF0528_0459 | |||
326 | phosphopyruvate hydratase | |||
327 | R | MspH5McrCP (97% identity) | Gme92McrC2P | |
328 | R | PdiPdMcrBP (31% identity) | Gme92McrB2P | |
331 | 68 aa hypothetical protein | |||
1014 | 60 aa hypothetical protein | |||
1015 | R | BspD22McrCP (57% identity) | Gme92McrCP | |
1016 | R | Lde22McrB2P (25% identity) | Gme92McrBP | |
1020 | valine--tRNA ligase |