Escherichia coli c20 |
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Putative Escherichia coli c20 RM systems
Ref: Ma,R. et al. Antonie Van Leeuwenhoek 110 (3), 387-397 (2017)
REBASE ref # 24797
Contig set: 4,918,305 bp
GenBank #: NGBR00000000 (NZ_NGBR00000000)
REBASE acronym: Ecoc20
Org_num: 25216
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 840 | Mrr restriction system protein | |||
| 841 | R | EcoM9682IP (98% identity) | AACNNNNNNGTGC | Ecoc20ORFEP |
| 849 | M | M.Eco34C21ORF2660P (99% identity) | AACNNNNNNGTGC | M.Ecoc20ORFEP |
| 853 | S | S.Ecos69ORF1130P (99% identity) | AACNNNNNNGTGC | S.Ecoc20ORFEP |
| 854 | Endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 28 | Nuclease-like protein | |||
| 29 | M | M.YpsF1ORFCP (100% identity) | M.Ecoc20ORFHP | |
| 32 | Uncharacterized protein | |||
| 40 | 238 aa hypothetical protein | |||
| 43 | M | M.YpsF1ORFBP (100% identity) | M.Ecoc20ORFGP | |
| 45 | 100 aa hypothetical protein | |||
| 87 | HD domain protein | |||
| 88 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Ecoc20DcmP |
| 90 | V | V.Ecos2020DcmP (100% identity) | V.Ecoc20DcmP | |
| 94 | Carboxylate/Amino Acid/Amine Transporter | |||
| 253 | Uncharacterized protein | |||
| 254 | M | M.YpsF1ORFDP (100% identity) | M.Ecoc20ORFIP | |
| 255 | DNA-binding protein | |||
| 359 | Cell division protein DamX | |||
| 362 | M | M.UbaC1152DamP (100% identity) | GATC | M.Ecoc20DamP |
| 364 | Ribulose-phosphate 3-epimerase | |||
| 669 | periplasmic protein | |||
| 670 | M | M.Eco4C17ORF2785P (99% identity) | ATGCAT | M.Ecoc20ORFCP |
| 672 | 98 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 839 | 216 aa hypothetical protein | |||
| 840 | R | SenHNK130MrrP (100% identity) | Ecoc20MrrP | |
| 841 | Type I restriction enzyme EcoKI R protein | |||
| 857 | 100 aa hypothetical protein | |||
| 858 | R | Msa17McrB2P (99% identity) | Ecoc20McrBP | |
| 859 | R | Msa17McrC2P (99% identity) | Ecoc20McrCP | |
| 860 | uncharacterized protein YjiV | |||