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Putative Helicobacter pylori SV340_2 RM systems
Ref: Pazos,A. et al. unpublished
REBASE ref # 24002
Contig set: 1,626,272 bp
GenBank #: MTWP00000000 (NZ_MTWP00000000)
REBASE acronym: Hpy340
Org_num: 24021
All begin BZK20_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
1900 | 499 aa hypothetical protein | |||
??? | S | S.HpyCO5ORF3790P (97% identity) | S.Hpy340ORF1905P | |
1910 | CAAX protease | |||
6495 | RNA degradosome polyphosphate kinase | |||
6505 | S | S.HpyI020ORF5275P (85% identity) | S.Hpy340ORF6510P | |
6510 | M | M.HpyBR7ORF2160P (97% identity) | M.Hpy340ORF6510P | |
6515 | R | Hpy908ORF455P (92% identity) | Hpy340ORF6510P | |
6520 | 631 aa hypothetical protein | |||
2195 | hydroxyethylthiazole kinase | |||
2200 | R | HpyJ99bORF2750P (96% identity) | Hpy340ORF2210P | |
2205 | S | S.HpyKH9ORFVP (97% identity) | S.Hpy340ORF2210P | |
2210 | M | M.HpyCOL301XV (97% identity) | M.Hpy340ORF2210P | |
2215 | DNA (cytosine-5-)-methyltransferase | |||
900 | metal-dependent hydrolase | |||
905 | R | HpySP405ORF7080P (96% identity) | Hpy340ORF910P | |
910 | M | M.HpyU416III (66% identity) | M.Hpy340ORF910P | |
915 | S | S.HpyME23ORF7335P (96% identity) | S.Hpy340ORF910P | |
920 | 59 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
7115 | 65 aa hypothetical protein | |||
7120 | M | M.HpyU302II (99% identity) | ATTAAT | M.Hpy340ORF7120P |
7125 | 264 aa hypothetical protein | |||
7135 | GTP-binding protein TypA | |||
7140 | M | M.Hpy449ORF7930P (100% identity) | ACNGT | M.Hpy340ORF7140P |
7145 | R | HpyLIM3ORF2260P (99% identity) | ACNGT | Hpy340ORF7140P |
7150 | DNA (cytosine-5-)-methyltransferase | |||
4375 | 144 aa hypothetical protein | |||
4380 | M | M.HpyBR13XI (96% identity) | GCGC | M.Hpy340ORF4380P |
4385 | flagellar biosynthesis protein FlgM | |||
7145 | restriction endonuclease | |||
7150 | M | M.HpyPOR113ORF2240P (98% identity) | ACGT | M.Hpy340ORF7150P |
7155 | R | Hpy5005ORF8020P (98% identity) | Hpy340ORF7150P | |
7160 | catalase | |||
7420 | flagellar hook protein FlgE | |||
7425 | R | HpyNG17IXP (97% identity) | GTNNAC | Hpy340ORF7430P |
7430 | M | M.HpyPOR112VIII (97% identity) | GTNNAC | M.Hpy340ORF7430P |
7435 | ATP-dependent DNA helicase | |||
1505 | Laminin subunit alpha-2 precursor | |||
1510 | R | HpyKH43ORFAP (100% identity) | TCNNGA | Hpy340ORF1515P |
1515 | M | M.HpyU414XI (99% identity) | TCNNGA | M.Hpy340ORF1515P |
1520 | acetyl-CoA carboxylase biotin carboxylase | |||
6690 | hydrolase | |||
6695 | M | M.HpySP606I (97% identity) | CATG | M.Hpy340ORF6695P |
??? | R | HpyR03IP (95% identity) | Hpy340ORF6695P | |
6705 | serine O-acetyltransferase | |||
6065 | elongation factor 4 | |||
6070 | M | M.HpyH012ORF1710P (100% identity) | M.Hpy340ORF6070P | |
6075 | 93 aa hypothetical protein | |||
3465 | 406 aa hypothetical protein | |||
3470 | R | HpyBR18VIIIP (97% identity) | GTAC | Hpy340ORF3475P |
3475 | M | M.HpyLIM6VII (99% identity) | GTAC | M.Hpy340ORF3475P |
3480 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
2560 | alpha-1,2-fucosyltransferase | |||
2565 | M | M.HpyI008IX (97% identity) | GATC | M.Hpy340ORF2565P |
2570 | R | HpyCOL103VIIP (97% identity) | GATC | Hpy340ORF2565P |
2580 | [acyl-carrier-protein] S-malonyltransferase | |||
4255 | 270 aa hypothetical protein | |||
4260 | RM | HpyC004ORF3190P (90% identity) | Hpy340ORF4260P | |
4265 | glycerol-3-phosphate dehydrogenase | |||
2760 | type II restriction endonuclease | |||
2765 | R | HpySA50ORF1883P (99% identity) | GTSAC | Hpy340ORF2770P |
2770 | M | M.HpyPE116IX (100% identity) | GTSAC | M.Hpy340ORF2770P |
2780 | restriction endonuclease | |||
2770 | site-specific DNA-methyltransferase | |||
2780 | M | M2.HpyPU010VP (95% identity) | M2.Hpy340ORF2780P | |
2785 | M | M1.HpyU302IV (98% identity) | CCTC | M1.Hpy340ORF2780P |
2790 | agmatine deiminase | |||
745 | peptidase S41 | |||
750 | R | HpyH011IIIP (95% identity) | GANTC | Hpy340ORF755P |
755 | M | M.HpyCOL118VIII (99% identity) | GANTC | M.Hpy340ORF755P |
760 | DNA methyltransferase | |||
755 | DNA methyltransferase | |||
760 | RM | HpyP009ORF6470P (91% identity) | Hpy340ORF760P | |
765 | nicotinate-nucleotide diphosphorylase | |||
4965 | exodeoxyribonuclease VII large subunit | |||
4970 | M | M.HpyH015XIV (97% identity) | TCGA | M.Hpy340ORF4970P |
4975 | 158 aa hypothetical protein | |||
4975 | 158 aa hypothetical protein | |||
4980 | R | HpyH004VP (96% identity) | Hpy340ORF4985P | |
4985 | M | M.HpyLIM9ORF1315P (98% identity) | M.Hpy340ORF4985P | |
4990 | ATP-dependent chaperone ClpB | |||
2210 | type I restriction-modification system subunit | |||
2215 | M | M.HpySP312ORF4340P (100% identity) | M.Hpy340ORF2215P | |
2220 | R | HpyU433ORF4085P (99% identity) | Hpy340ORF2215P | |
2225 | phosphatase PAP2 family protein | |||
990 | 95 aa hypothetical protein | |||
995 | RM | HpyME06ORF7305P (81% identity) | Hpy340ORF995P | |
1000 | 173 aa hypothetical protein | |||
1075 | 388 aa hypothetical protein | |||
1080 | R | HpyU001IIIP (99% identity) | CCATC | Hpy340ORF1085P |
1085 | M | M2.HpyU001III (100% identity) | CCATC | M2.Hpy340ORF1085P |
1090 | M | M1.HpyU001III (100% identity) | CCATC | M1.Hpy340ORF1085P |
1095 | permease | |||
3335 | glycosyl transferase 8 family protein | |||
3340 | M | M.HpyPO06ORF7325P (98% identity) | M.Hpy340ORF3340P | |
3345 | site-specific DNA-methyltransferase | |||
1220 | amidophosphoribosyltransferase | |||
1225 | RM | HpySP05ORF800P (98% identity) | Hpy340ORF1225P | |
??? | S | S.HpyPU007XIX (63% identity) | S1.Hpy340ORF1225P | |
??? | S | S1.HpyCRI5ORF7585P (56% identity) | S2.Hpy340ORF1225P | |
1235 | DNA polymerase I | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
7750 | M | 162 aa hypothetical protein | M.Hpy340ORF7750P | |
7755 | R | HpyPOR109ORF6560P (92% identity) | Hpy340ORF7750P | |
7760 | rod shape-determining protein MreC | |||
7815 | endonuclease | |||
7820 | M | M.HpyC127XV (94% identity) | M.Hpy340ORF7820P | |
7825 | R | HpyCO8ORF7305P (96% identity) | Hpy340ORF7820P | |
7830 | type III restriction endonuclease subunit R | |||
975 | ATP-dependent DNA helicase RecG | |||
980 | M | M.Hpy4ORF7450P (97% identity) | M.Hpy340ORF980P | |
985 | R | HpyPOR113ORF6940P (95% identity) | Hpy340ORF980P | |
990 | 95 aa hypothetical protein |