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Putative Helicobacter pylori PZ5019_3A3 RM systems
Ref: Pazos,A. et al. unpublished
REBASE ref # 24002
Contig set: 1,673,393 bp
GenBank #: MTWM00000000 (NZ_MTWM00000000)
REBASE acronym: Hpy5019
Org_num: 24018
All begin BZK18_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
5825 | S | S.HpySP101ORF7070P (45% identity) | S.Hpy5019ORF5825P | |
5830 | 499 aa hypothetical protein | |||
8220 | S | S.HpyR06ORF7030P (53% identity) | S.Hpy5019ORF8220P | |
4425 | metal-dependent hydrolase | |||
4430 | R | HpySP07XIVP (94% identity) | Hpy5019ORF4435P | |
4435 | M | M.HpySP803XV (96% identity) | M.Hpy5019ORF4435P | |
5130 | hydroxyethylthiazole kinase | |||
5135 | R | HpySP310ORF2590P (95% identity) | Hpy5019ORF5145P | |
5140 | S | S.HpyLI31ORF4220P (96% identity) | S.Hpy5019ORF5145P | |
5145 | M | M.HpySP314XIV (95% identity) | M.Hpy5019ORF5145P | |
5150 | type I restriction endonuclease subunit M | |||
7225 | 0 aa hypothetical protein | |||
7230 | S | S.Hpy380ORF6935P (97% identity) | S.Hpy5019ORF7235P | |
7235 | M | M.HpyU418ORF2165P (96% identity) | M.Hpy5019ORF7235P | |
7240 | R | HpyU311ORF2230P (93% identity) | Hpy5019ORF7235P | |
7245 | 631 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
7840 | catalase | |||
7845 | R | HpyU206ORF2245P (98% identity) | Hpy5019ORF7850P | |
7850 | M | M.HpyGM9ORF2250P (98% identity) | ACGT | M.Hpy5019ORF7850P |
7855 | restriction endonuclease | |||
7850 | DNA (cytosine-5-)-methyltransferase | |||
7855 | R | HpyCOL206IIP (99% identity) | Hpy5019ORF7860P | |
7860 | M | M.HpyNG10II (98% identity) | ACNGT | M.Hpy5019ORF7860P |
7865 | GTP-binding protein TypA | |||
4245 | peptidase S41 | |||
4250 | R | HpyBR5VIIP (98% identity) | GANTC | Hpy5019ORF4255P |
4255 | M | M.HpyH023I (99% identity) | GANTC | M.Hpy5019ORF4255P |
??? | Uncharacterized protein | |||
7870 | glycosyltransferase 9 family protein | |||
7875 | M | M.HpyH023ORF2210P (97% identity) | ATTAAT | M.Hpy5019ORF7875P |
4255 | DNA methyltransferase | |||
??? | RM | Uncharacterized protein | Hpy5019ORF4260BP | |
??? | RM | HpyH012ORF6420P (68% identity) | Hpy5019ORF4260AP | |
4265 | nicotinate-nucleotide diphosphorylase | |||
7405 | methyltransferase | |||
7410 | M | M.HpyJO3XIII (99% identity) | TCNNGA | M.Hpy5019ORF7410P |
7415 | R | HpySP204VIIIP (99% identity) | TCNNGA | Hpy5019ORF7410P |
7420 | Laminin subunit alpha-2 precursor | |||
265 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
270 | M | M.HpyCO11IX (99% identity) | GTAC | M.Hpy5019ORF270P |
275 | R | HpyH004XIIP (96% identity) | Hpy5019ORF270P | |
280 | 406 aa hypothetical protein | |||
2940 | DEAD/DEAH box helicase | |||
2945 | RM | HpyB136AORF65P (61% identity) | Hpy5019ORF2945P | |
2950 | reverse transcriptase | |||
3455 | flagellar biosynthesis protein FlgM | |||
3460 | M | M.HpyBR7XI (95% identity) | M.Hpy5019ORF3460P | |
3465 | 144 aa hypothetical protein | |||
7580 | ATP-dependent DNA helicase | |||
7585 | M | M.HpyCOL301X (98% identity) | GTNNAC | M.Hpy5019ORF7585P |
7590 | R | Hpy8I (98% identity) | GTNNAC | Hpy5019ORF7585P |
7595 | flagellar hook protein FlgE | |||
5420 | acetone carboxylase subunit gamma | |||
5425 | R | HpyPE17ORF3810P (99% identity) | Hpy5019ORF5430P | |
5430 | M | M.HpyPOR110ORF2345P (99% identity) | CCNNGG | M.Hpy5019ORF5430P |
5435 | 3-5 exonuclease | |||
4315 | two-component system response regulator | |||
4320 | R | HpyPE13XIVP (92% identity) | Hpy5019ORF4325P | |
4325 | M | M.HpyU003XIV (90% identity) | M.Hpy5019ORF4325P | |
4330 | 68 aa hypothetical protein | |||
2720 | serine O-acetyltransferase | |||
2725 | R | HpyPO06IP (99% identity) | CATG | Hpy5019ORF2730P |
2730 | M | M.HpyCO7I (99% identity) | CATG | M.Hpy5019ORF2730P |
2735 | hydrolase | |||
6335 | exodeoxyribonuclease VII large subunit | |||
6340 | M | M.HpyC124ORF1310P (98% identity) | TCGA | M.Hpy5019ORF6340P |
6345 | 204 aa hypothetical protein | |||
6350 | R | HpyCOL104ORF4700P (92% identity) | CCGG | Hpy5019ORF6340P |
6355 | site-specific DNA-methyltransferase | |||
6350 | endonuclease | |||
6355 | M | M.HpySWT06I (100% identity) | CCGG | M.Hpy5019ORF6355P |
6360 | ATP-dependent chaperone ClpB | |||
5760 | 641 aa hypothetical protein | |||
5765 | M | M.HpyISR6XIII (99% identity) | TCNGA | M.Hpy5019ORF5765P |
5770 | R | 115 aa hypothetical protein | Hpy5019ORF5765P | |
5775 | purine-nucleoside phosphorylase | |||
3030 | 388 aa hypothetical protein | |||
??? | R | HpySW17ORF7020P (87% identity) | Hpy5019ORFAP | |
3040 | DNA cytosine methyltransferase | |||
??? | Restriction endonuclease | |||
3040 | M | M.HpyUM067ORF4540P (100% identity) | M.Hpy5019ORF3040P | |
3045 | permease | |||
3170 | amidophosphoribosyltransferase | |||
3175 | RM | HpyPE117ORF7325P (99% identity) | Hpy5019ORF3175P | |
3180 | S | S.Hpyfe83ORF275P (61% identity) | S.Hpy5019ORF3175P | |
3185 | DNA polymerase I | |||
6780 | elongation factor 4 | |||
6785 | M | M.HpyK048ORF1850P (99% identity) | M.Hpy5019ORF6785P | |
6790 | 92 aa hypothetical protein | |||
1720 | alpha-1,2-fucosyltransferase | |||
1725 | M | M.HpyNG10VIII (98% identity) | GATC | M.Hpy5019ORF1725P |
1730 | R | HpyCO4VIP (96% identity) | GATC | Hpy5019ORF1725P |
1740 | malonyl CoA-acyl carrier protein transacylase | |||
1905 | sodium/proline symporter | |||
1910 | M | M.HpyU004VII (96% identity) | CCTTC | M.Hpy5019ORF1910P |
1915 | R | HpyLI01VIIIP (97% identity) | Hpy5019ORF1910P | |
1920 | restriction endonuclease | |||
1915 | restriction endonuclease | |||
1920 | M | M2.HpySP15XIP (93% identity) | M2.Hpy5019ORF1920P | |
1925 | M | M1.HpyP110V (97% identity) | CCTC | M1.Hpy5019ORF1920P |
1930 | agmatine deiminase | |||
2455 | glycosyl transferase 8 family protein | |||
2460 | M | M.HpyNG17ORF7685P (84% identity) | M.Hpy5019ORF2460P | |
2465 | restriction endonuclease subunit M | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
2930 | ATP-dependent DNA helicase RecG | |||
2935 | M | M.HpyCO10ORF6795P (96% identity) | M.Hpy5019ORF2935P | |
2940 | R | HpyBR23ORF6855P (97% identity) | Hpy5019ORF2935P | |
2945 | type II restriction endonuclease | |||
2460 | restriction endonuclease subunit M | |||
??? | M | M.HpyU424ORF7715P (94% identity) | M.Hpy5019ORF2465P | |
2475 | R | HpyBR7ORF7490P (93% identity) | Hpy5019ORF2465P | |
2480 | rod shape-determining protein MreC | |||
2525 | endonuclease | |||
2530 | M | M.HpyH012ORF7235P (98% identity) | M.Hpy5019ORF2530P | |
2535 | R | HpyCOL107ORF6815P (82% identity) | Hpy5019ORF2530P | |
2540 | type III restriction endonuclease subunit R |