Shewanella species FDAARGOS_354 |
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Putative Shewanella species FDAARGOS_354 RM systems
Ref: Minogue,T. et al. unpublished
REBASE ref # 24773
| Sequence length: | GenBank #: | |
| Chromosome: | 5,031,863 bp | CP022089 |
| plasmid unnamed1: | 38,118 bp | CP022090 |
REBASE acronym: Ssp354
Org_num: 25016
All begin CEQ32_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9685 | 452 aa hypothetical protein | |||
| 9690 | R | Vsp1105ORF3940P (99% identity) | CACNNNNNNTAYG | Ssp354IIP |
| 9695 | Fic family protein | |||
| 9700 | S | S.Vsp1105ORF3940P (100% identity) | CACNNNNNNTAYG | S.Ssp354II |
| 9705 | M | M.Vsp1105ORF3940P (100% identity) | CACNNNNNNTAYG | M.Ssp354II |
| 9710 | DUF3368 domain-containing protein | |||
| 14565 | 1224 aa hypothetical protein | |||
| 14570 | S | S.Psp99ORF19010P (53% identity) | RTAYNNNNNNGTTC | S.Ssp354I |
| 14575 | M | M.SspLC6ORF320P (97% identity) | RTAYNNNNNNGTTC | M.Ssp354I |
| 14580 | 327 aa hypothetical protein | |||
| 14585 | glycosyltransferase | |||
| 14590 | glycosyltransferase | |||
| 14595 | R | Sxi8M38ORFEP (99% identity) | RTAYNNNNNNGTTC | Ssp354IP |
| 14600 | 82 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5885 | PglZ domain-containing protein | |||
| 5890 | RM | restriction endonuclease | Ssp354ORF5890BP | |
| 5895 | IS4-like element IS10A family transposase | |||
| ??? | RM | PspHLAS2ORF14695P (81% identity) | Ssp354ORF5890AP | |
| 5905 | BREX system P-loop protein BrxC | |||
| 12500 | 147 aa hypothetical protein | |||
| 12505 | M | M.SspLZH2ORF17075P (99% identity) | M.Ssp354ORF12505P | |
| 12510 | IS1634 family transposase ISSpu7 | |||
| 14160 | 76 aa hypothetical protein | |||
| 14165 | M | M.SspLC6ORF21080P (100% identity) | M.Ssp354ORF14165P | |
| 14170 | R | SspYLB06ORF3130P (71% identity) | Ssp354ORF14165P | |
| 14175 | IS256-like element ISSod4 family transposase | |||
| 14185 | 636 aa hypothetical protein | |||
| 14190 | R | SspLC6ORF21115P (100% identity) | DSCGDG | Ssp354ORF14190P |
| 14195 | DUF4172 domain-containing protein | |||
| 17555 | AAA family ATPase | |||
| 17560 | M | M.SxiT17ORF9245P (100% identity) | GATC | M.Ssp354Dam |
| 17565 | DUF2970 domain-containing protein | |||
| plasmid unnamed1 | ||||
| 22675 | replication protein RepA | |||
| 22680 | C | C.Aca2508ORF7645P (69% identity) | C.Ssp354ORF22690P | |
| 22685 | R | LspM41ORF5195P (83% identity) | Ssp354ORF22690P | |
| 22690 | M | M.Aca2508ORF7645P (84% identity) | M.Ssp354ORF22690P | |
| 22695 | 813 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10305 | DUF4372 domain-containing protein | |||
| 10310 | R | EcoC68ORF22530P (99% identity) | CGAAG | Ssp354IIIP |
| 10315 | M | M.Vch98481ORF621P (99% identity) | CGAAG | M.Ssp354III |
| 10320 | DUF4391 domain-containing protein | |||