Escherichia coli Z1002 |
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Putative Escherichia coli Z1002 RM systems
Ref: Zheng,B. et al. Clin. Infect. Dis. 63 (10), 1393-1395 (2016)
REBASE ref # 24608
| Sequence length: | GenBank #: | |
| Chromosome: | 5,177,498 bp | CP021202 |
| plasmid p1002-1: | 183,508 bp | CP021203 |
| plasmid p1002-4: | 92,438 bp | CP021204 |
| plasmid p1002-NDM1: | 111,688 bp | CP021206 |
REBASE acronym: EcoZ1002
Org_num: 24430
All begin CA268_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6990 | 113 aa hypothetical protein | |||
| 6995 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.EcoZ1002ORF7000P |
| 7000 | M | M.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | M.EcoZ1002ORF7000P |
| 7005 | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | EcoZ1002ORF7000P |
| 7010 | restriction endonuclease | |||
| plasmid p1002-1 | ||||
| 26970 | prevent-host-death family protein | |||
| 26975 | M | M.EcoNEC5ORF6225P (100% identity) | M.EcoZ1002ORF26975P | |
| 26980 | S | S.EcoCPE35ORF5500P (66% identity) | S.EcoZ1002ORF26975P | |
| 26985 | R | EcoNEC5ORF6225P (100% identity) | EcoZ1002ORF26975P | |
| 26990 | 3-phosphatase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 115 | Fis family transcriptional regulator | |||
| 120 | M | M.EcosS1ORF18905P (100% identity) | ATGCAT | M.EcoZ1002ORF120P |
| 125 | transporter | |||
| 680 | ribulose-phosphate 3-epimerase | |||
| 685 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoZ1002DamP |
| 690 | cell division protein DamX | |||
| 18750 | drug/metabolite exporter YedA | |||
| 18755 | V | V.SflSTLE3DcmP (100% identity) | V.EcoZ1002DcmP | |
| 18760 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.EcoZ1002DcmP |
| 18765 | hydrolase | |||
| 22330 | transcriptional regulator | |||
| 22335 | M | M.EcosS1ORF2855P (100% identity) | M.EcoZ1002ORF22335P | |
| 22340 | serine/threonine protein phosphatase | |||
| plasmid p1002-1 | ||||
| 27095 | 63 aa hypothetical protein | |||
| 27110 | M | M.EcoS321ORF25340P (100% identity) | M.EcoZ1002ORF27110P | |
| 27115 | recombination-associated protein RdgC | |||
| 27370 | 59 aa hypothetical protein | |||
| 27375 | M | M.Xca80ORFEP (100% identity) | M.EcoZ1002ORF27375P | |
| 27380 | 73 aa hypothetical protein | |||
| plasmid p1002-4 | ||||
| 27850 | 0 aa hypothetical protein | |||
| 27855 | M | M.Sso8ORF23800P (100% identity) | SAY | M.EcoZ1002ORF27855P |
| 27860 | 73 aa hypothetical protein | |||
| plasmid p1002-NDM1 | ||||
| 29315 | 149 aa hypothetical protein | |||
| ??? | M | M.Sma1978ORFAP (100% identity) | M.EcoZ1002ORF29320P | |
| 29325 | 120 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7005 | type I restriction-modification system | |||
| 7010 | R | EcosS1MrrP (100% identity) | EcoZ1002MrrP | |
| 7015 | GTPase | |||