Escherichia coli SLK172 |
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Putative Escherichia coli SLK172 RM systems
Ref: Bai,L. et al. unpublished
REBASE ref # 23725
| Sequence length: | GenBank #: | |
| Chromosome: | 5,283,836 bp | CP017631 |
| plasmid pSLK172-1: | 369,298 bp | CP017632 |
| plasmid pSLK172-2: | 120,528 bp | CP017633 |
REBASE acronym: Eco172
Org_num: 22501
All begin BJJ90_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5975 | transposase | |||
| 5980 | R | SenSI167ORF3215P (100% identity) | Eco172ORF5995P | |
| 5985 | 387 aa hypothetical protein | |||
| 5990 | S | S.SenSI167ORF3215P (98% identity) | S.Eco172ORF5995P | |
| 5995 | M | M.SenSI167ORF3215P (100% identity) | M.Eco172ORF5995P | |
| 6000 | transposase | |||
| 14835 | metal-dependent hydrolase | |||
| 14840 | R | EcoPK8241ORF9245P (100% identity) | Eco172ORF14855P | |
| 14845 | 227 aa hypothetical protein | |||
| 14850 | S | S.EcoPK8241ORF9245P (92% identity) | S.Eco172ORF14855P | |
| 14855 | M | M.Ero309ORF14810P (100% identity) | M.Eco172ORF14855P | |
| 14860 | 388 aa hypothetical protein | |||
| 16180 | 50S ribosome-binding GTPase | |||
| 16185 | M | M.Kpn1678ORF16290P (100% identity) | M.Eco172ORF16185P | |
| 16190 | S | S.KpnB31ORF722P (69% identity) | S.Eco172ORF16185P | |
| 16195 | HsdR protein | |||
| 16200 | IS30 family transposase | |||
| 16205 | R | EcoF374ORF24310P (90% identity) | Eco172ORF16185P | |
| 16210 | IS5 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1760 | cell division protein DamX | |||
| 1765 | M | DNA adenine methylase | GATC | M.Eco172DamP |
| 1770 | ribulose-phosphate 3-epimerase | |||
| 2405 | DUF2556 domain-containing protein | |||
| 2410 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco172ORF2410P |
| 2415 | Fis family transcriptional regulator | |||
| 9065 | protein ninB | |||
| 9070 | M | M.SflN97ORF15810P (100% identity) | GATC | M.Eco172ORF9070P |
| 9075 | protein ninE | |||
| 10045 | 106 aa hypothetical protein | |||
| 10050 | M | M.EcoS7005ORFLP (100% identity) | M.Eco172ORF10050P | |
| 10070 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | |||
| 11100 | TrmB family transcriptional regulator | |||
| 11105 | M | M.EcoPK8241ORF3025P (88% identity) | M.Eco172ORF11105P | |
| 11130 | holin | |||
| 15170 | drug/metabolite exporter YedA | |||
| 15175 | V | V.SsoSE61DcmP (100% identity) | V.Eco172DcmP | |
| 15180 | M | M.SspS13DcmP (100% identity) | CCWGG | M.Eco172DcmP |
| 15185 | phosphohydrolase | |||
| 15440 | holin | |||
| 15445 | M | M.EcoPK8241ORF4525P (100% identity) | M.Eco172ORF15445P | |
| 15450 | TrmB family transcriptional regulator | |||
| 18125 | transposase | |||
| 18130 | M | M.EcoS7380ORFIP (94% identity) | GATC | M.Eco172ORF18130P |
| 18135 | protein ninE | |||
| 24595 | holin | |||
| 24600 | M | M.Sso63633ORF22290P (100% identity) | M.Eco172ORF24600P | |
| 24605 | 67 aa hypothetical protein | |||
| 24635 | LexA family transcriptional regulator | |||
| 24640 | M | M.Sso7924ORF2966P (100% identity) | GATC | M.Eco172ORF24640P |
| 24645 | 162 aa hypothetical protein | |||
| plasmid pSLK172-1 | ||||
| 27105 | recombination-associated protein RdgC | |||
| 27110 | M | M.EcoPK8241ORF24920P (100% identity) | M.Eco172ORF27110P | |
| 27115 | transposase | |||
| 27235 | 0 aa hypothetical protein | |||
| 27240 | M | M.EcoPK8241ORF24805P (100% identity) | M.Eco172ORF27240P | |
| 27245 | 60 aa hypothetical protein | |||
| 27610 | nuclease | |||
| 27615 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.Eco172ORF27615P |
| 27620 | 439 aa hypothetical protein | |||
| 28250 | transposase | |||
| 28255 | M | M.YpsF1ORFDP (92% identity) | M.Eco172ORF28255P | |
| 28260 | DNA-binding protein | |||
| 28365 | 202 aa hypothetical protein | |||
| 28370 | M | M.YpsF1ORFBP (100% identity) | M.Eco172ORF28370P | |
| 28375 | 108 aa hypothetical protein | |||
| plasmid pSLK172-2 | ||||
| 29340 | 73 aa hypothetical protein | |||
| 29345 | M | M.Xca80ORFEP (100% identity) | M.Eco172ORF29345P | |
| 29350 | 97 aa hypothetical protein | |||