Escherichia coli C5 |
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Putative Escherichia coli C5 RM systems
Ref: Jiang,J. et al. unpublished
REBASE ref # 23554
| Sequence length: | GenBank #: | |
| Chromosome: | 5,333,488 bp | CP010122 |
| plasmid A: | 214,445 bp | CP010123 |
| plasmid B: | 86,032 bp | CP010124 |
REBASE acronym: EcoC5
Org_num: 21859
All begin RG28_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5115 | membrane protein | |||
| 5120 | R | EcoXH993ORF23720P (100% identity) | EcoC5ORF5125P | |
| 5125 | M | M.EcoZ503ORFCP (97% identity) | M.EcoC5ORF5125P | |
| 5130 | S | S.Ecoa005ORF2260P (100% identity) | S.EcoC5ORF5125P | |
| 5135 | endoribonuclease SymE | |||
| 5355 | 128 aa hypothetical protein | |||
| 5360 | M | M.EcoSTEC866ORF20040P (100% identity) | M.EcoC5ORF5360P | |
| 5365 | S | S.EcoSTEC640ORF20915P (100% identity) | S.EcoC5ORF5360P | |
| 5370 | membrane protein | |||
| 26610 | 206 aa hypothetical protein | |||
| 26615 | R | Eco13107ORF130P (99% identity) | EcoC5ORF26620P | |
| 26620 | M | M.Eco13107ORF130P (100% identity) | M.EcoC5ORF26620P | |
| ??? | S | S.Eco13107ORF130P (100% identity) | S.EcoC5ORF26620P | |
| 26630 | 385 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7180 | XRE family transcriptional regulator | |||
| 7185 | R | KpnSB611ORF4590P (100% identity) | GCWGC | EcoC5ORF7185P |
| 7190 | 540 aa hypothetical protein | |||
| 8570 | TrmB family transcriptional regulator | |||
| 8575 | M | M.EcoC5ORF19235P (100% identity) | M.EcoC5ORF8575P | |
| 8585 | holin | |||
| 12160 | hydrolase | |||
| 12165 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoC5DcmP |
| 12170 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.EcoC5DcmP |
| 12175 | multidrug DMT transporter | |||
| 17815 | TrmB family transcriptional regulator | |||
| 17820 | M | M.Eco10C14ORF10980P (100% identity) | M.EcoC5ORF17820P | |
| 17830 | 163 aa hypothetical protein | |||
| 18320 | DNA-binding protein | |||
| 18325 | M | M.Cro51459ORF3430P (99% identity) | M.EcoC5ORF18325P | |
| 18330 | phage protein | |||
| 19215 | antiterminator | |||
| 19235 | M | M.EcoC5ORF8575P (100% identity) | M.EcoC5ORF19235P | |
| 19240 | 106 aa hypothetical protein | |||
| 21405 | Fis family transcriptional regulator | |||
| 21410 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoC5ORF21410P |
| 21415 | 59 aa hypothetical protein | |||
| 21950 | ribulose-phosphate 3-epimerase | |||
| 21955 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoC5DamP |
| 21960 | cell division protein DamX | |||
| plasmid A | ||||
| 27410 | 73 aa hypothetical protein | |||
| 27415 | M | M.EcosW25KORF26210P (99% identity) | M.EcoC5ORF27415P | |
| 27420 | 103 aa hypothetical protein | |||
| plasmid B | ||||
| 28645 | pseudogene | |||
| 28650 | M | M.Eco3234AORF50P (98% identity) | M.EcoC5ORF28650P | |
| 28655 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5340 | restriction endonuclease | |||
| 5345 | R | SflN101McrBP (100% identity) | EcoC5McrBP | |
| 5350 | R | SflN101McrCP (100% identity) | EcoC5McrCP | |
| 5355 | 128 aa hypothetical protein | |||