Salmonella enterica subsp. enterica serovar Typhimurium CFSAN033878 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Typhimurium CFSAN033878 RM systems
Ref: Timme,R. et al. unpublished
REBASE ref # 22799
Contig set: 4,963,458 bp
GenBank #: LUJD00000000 (NZ_LUJD00000000)
REBASE acronym: Sen33878
Org_num: 21346
All begin AIZ23_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4165 | 110 aa hypothetical protein | |||
| 4170 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen33878ORF4175P |
| 4175 | M | M.StyUK1II (100% identity) | GAGNNNNNNRTAYG | M.Sen33878ORF4175P |
| 4180 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen33878ORF4175P |
| 4185 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4330 | ribulose phosphate epimerase | |||
| 4335 | M | M.StyTDamP (100% identity) | GATC | M.Sen33878DamP |
| 4340 | cell division protein DamX | |||
| 22410 | multidrug DMT transporter | |||
| 22415 | V | V.StyUK1DcmP (100% identity) | V.Sen33878DcmP | |
| 22420 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen33878DcmP |
| 22425 | hydrolase | |||
| 22200 | Fis family transcriptional regulator | |||
| 22205 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen33878ORF22205P |
| 22210 | 54 aa hypothetical protein | |||
| 16065 | 75 aa hypothetical protein | |||
| 16070 | M | M.StySopEDamP (100% identity) | GATC | M.Sen33878ORF16070P |
| 16075 | endonuclease | |||
| 17355 | 62 aa hypothetical protein | |||
| 17360 | M | M.StyUK1ORFAP (100% identity) | M.Sen33878ORF17360P | |
| 17365 | 73 aa hypothetical protein | |||
| 12840 | 160 aa hypothetical protein | |||
| 12845 | M | M.StyUK1V (100% identity) | GATC | M.Sen33878ORF12845P |
| 12850 | crossover junction endodeoxyribonuclease | |||
| 4005 | 363 aa hypothetical protein | |||
| 4010 | RM | SenSTm9ORF21385P (100% identity) | GATCAG | Sen33878ORF4010P |
| 4015 | DNA repair protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7595 | 33 aa hypothetical protein | |||
| 7600 | R | StyUK1IP (99% identity) | CAGAG | Sen33878ORF7605P |
| 7605 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen33878ORF7605P |
| 7610 | sugar transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4180 | DEAD/DEAH box helicase | |||
| 4185 | R | StyUK1MrrP (100% identity) | Sen33878MrrP | |
| 4190 | 95 aa hypothetical protein | |||