Salmonella enterica subsp. enterica serovar Typhimurium CFSAN033851 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium CFSAN033851 RM systems
Ref: Timme,R. et al. unpublished
REBASE ref # 22799
Contig set: 4,924,115 bp
GenBank #: LVGZ00000000 (NZ_LVGZ00000000)
REBASE acronym: Sen33851
Org_num: 21337
All begin AIY96_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 13870 | transposase | |||
| 13875 | R | Sen33866ORF23510P (100% identity) | TGANNNNNNCTTC | Sen33851ORF13880P |
| 13880 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.Sen33851ORF13880P |
| 13885 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.Sen33851ORF13880P |
| 13890 | 540 aa hypothetical protein | |||
| 4955 | restriction endonuclease | |||
| 4960 | R | StyLT2IIP (100% identity) | GAGNNNNNNRTAYG | Sen33851ORF4965P |
| 4965 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.Sen33851ORF4965P |
| 4970 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen33851ORF4965P |
| 4975 | 110 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 23980 | 149 aa hypothetical protein | |||
| 23985 | M | M.Ssp15303ORFAP (100% identity) | M.Sen33851ORF23985P | |
| 23990 | 82 aa hypothetical protein, partial | |||
| 3005 | crossover junction endodeoxyribonuclease | |||
| ??? | M | M.Ssp17155ORFIP (100% identity) | GATC | M.Sen33851ORF3010P |
| 3015 | 157 aa hypothetical protein | |||
| 5490 | ribulose phosphate epimerase | |||
| 5495 | M | M.StyTDamP (100% identity) | GATC | M.Sen33851DamP |
| 5500 | cell division protein DamX | |||
| 23220 | 146 aa hypothetical protein | |||
| 23225 | M | M.Sen7563ORF16315P (100% identity) | GATC | M.Sen33851ORF23225P |
| 23230 | 72 aa hypothetical protein | |||
| 21830 | 62 aa hypothetical protein | |||
| 21835 | M | M.StyUK1ORFAP (100% identity) | M.Sen33851ORF21835P | |
| 21840 | 73 aa hypothetical protein | |||
| 20870 | multidrug DMT transporter | |||
| 20875 | V | V.StyUK1DcmP (100% identity) | V.Sen33851DcmP | |
| 20880 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen33851DcmP |
| 20885 | hydrolase | |||
| 20250 | Fis family transcriptional regulator | |||
| 20255 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen33851ORF20255P |
| 20260 | 54 aa hypothetical protein | |||
| 12815 | integrase | |||
| 12820 | M | M.Sens23357ORF6185P (100% identity) | GATC | M.Sen33851ORF12820P |
| 12825 | 59 aa hypothetical protein | |||
| 5125 | DNA repair protein | |||
| 5130 | RM | StyUK1IV (100% identity) | GATCAG | Sen33851ORF5130P |
| 5135 | 363 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 815 | 33 aa hypothetical protein | |||
| 820 | R | StyUK1IP (99% identity) | CAGAG | Sen33851ORF825P |
| 825 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen33851ORF825P |
| 830 | pseudogene | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4950 | 95 aa hypothetical protein | |||
| 4955 | R | StyUK1MrrP (100% identity) | Sen33851MrrP | |
| 4960 | DEAD/DEAH box helicase | |||