Escherichia coli RiKo 2308/09 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli RiKo 2308/09 RM systems
Ref: Leimbach,A. et al. unpublished
REBASE ref # 22656
Contig set: 5,112,873 bp
GenBank #: LCVI00000000 (NZ_LCVI00000000)
REBASE acronym: Eco2308
Org_num: 20903
All begin RIKO2308_117c, RIKO2308_182c, RIKO2308_46c, RIKO2308_4c, RIKO2308_56c, RIKO2308_67c, RIKO2308_70c, RIKO2308_80c
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 30 | 73 aa hypothetical protein | |||
| 40 | M | M.EcoSCU204ORF26105P (100% identity) | M.Eco2308ORF40P | |
| 50 | 308 aa hypothetical protein | |||
| 20 | SIR2-like domain protein | |||
| 30 | S | S.EcoECB1ORF9045P (100% identity) | S.Eco2308ORF40P | |
| 40 | M | M.EcoSCU204ORF26105P (100% identity) | M.Eco2308ORF40P | |
| 50 | R | EcoC0331ORF7685P (100% identity) | Eco2308ORF40P | |
| 60 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10 | M | M.KpnVA569ORF28145P (100% identity) | M.Eco2308ORF10P | |
| 20 | 73 aa hypothetical protein | |||
| 280 | integrase | |||
| 290 | M | M.EcosEC31ORF18555P (100% identity) | GGTACC | M.Eco2308ORF290P |
| 300 | 568 aa hypothetical protein | |||
| 470 | D-ribulose-5-phosphate 3-epimerase | |||
| 480 | M | DNA adenine methyltransferase | GATC | M.Eco2308DamP |
| 490 | cell division protein that binds to the septal | |||
| 400 | global DNA-binding transcriptional dual | |||
| 410 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco2308ORF410P |
| 1540 | transcriptional activator from phage | |||
| ??? | M | M.EfeC23ORF6940P (99% identity) | GATC | M.Eco2308ORF1550P |
| 1570 | phage protein | |||
| 4190 | amino acid exporter for phenylalanine, | |||
| 4200 | V | V.SsoSE61DcmP (100% identity) | V.Eco2308DcmP | |
| 4210 | M | M.SspS13DcmP (100% identity) | CCWGG | M.Eco2308DcmP |
| 4220 | HD superfamily phosphohydrolase | |||