Salmonella enterica subsp. enterica serovar Johannesburg SA20025782 |
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Putative Salmonella enterica subsp. enterica serovar Johannesburg SA20025782 RM systems
Ref: Yoshida,C. et al. Genome Announc 4 (2) (2016)
REBASE ref # 21646
Contig set: 4,242,804 bp
GenBank #: LHSZ00000000 (NZ_LHSZ00000000)
REBASE acronym: Sen25782
Org_num: 19097
All begin LFZ20_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4960 | integrase | |||
| 4965 | S | S.SenSmo02ORF2495P (100% identity) | S.Sen25782ORFAP | |
| ??? | M | M.SenSmo02ORF2495P (94% identity) | M.Sen25782ORFAP | |
| 4970 | metal-dependent hydrolase | |||
| 4975 | R | SenSmo02ORF2465P (99% identity) | Sen25782ORFAP | |
| 4980 | pseudogene | |||
| 4985 | pseudogene | |||
| ??? | S | S1.SenSmo02ORF2465P (90% identity) | S.Sen25782ORF5000P | |
| ??? | M | M1.SenSmo02ORF2465P (92% identity) | M.Sen25782ORF5000P | |
| 5005 | pseudogene | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20660 | 74 aa hypothetical protein | |||
| 20665 | M | pseudogene | GATC | M.Sen25782DamP |
| 20670 | ribulose phosphate epimerase | |||
| 10430 | perC transcriptional activator family protein | |||
| 10435 | M | M.SenST203ORF13320P (100% identity) | AAGCTT | M.Sen25782ORF10435P |
| 10440 | 83 aa hypothetical protein | |||
| 9600 | hydrolase | |||
| 9605 | M | M.SenST203DcmP (99% identity) | CCWGG | M.Sen25782DcmP |
| 9610 | V | V.StyUK1DcmP (99% identity) | CCWGG | V.Sen25782DcmP |
| 9615 | pseudogene | |||
| 3045 | crossover junction endodeoxyribonuclease | |||
| 3050 | M | M.SenST203ORF14210P (99% identity) | GATC | M.Sen25782ORF3050P |
| 3055 | 160 aa hypothetical protein | |||
| 18345 | 54 aa hypothetical protein | |||
| 18350 | M | M.StyUK1III (88% identity) | ATGCAT | M.Sen25782ORF18350P |
| 18355 | Fis family transcriptional regulator | |||
| 4375 | 76 aa hypothetical protein | |||
| 4380 | M | M.SenST203ORF4380P (100% identity) | GATC | M.Sen25782ORF4380P |
| 4385 | pseudogene | |||
| 7520 | 127 aa hypothetical protein | |||
| 7525 | M | M.SenST203ORF20895P (100% identity) | GATC | M1.Sen25782ORF7525P |
| 7530 | 75 aa hypothetical protein | |||
| 7535 | M | M.SenST203ORF20905P (100% identity) | M2.Sen25782ORF7525P | |
| 7540 | pseudogene | |||
| 7555 | 66 aa hypothetical protein | |||
| 7560 | M | M.SenST203ORF20920P (100% identity) | M.Sen25782ORF7560P | |
| 7565 | pseudogene | |||
| 11830 | cruciferin | |||
| ??? | M | M1.SenST203ORF12435P (100% identity) | YGGCCR | M.Sen25782ORFBP |
| 11835 | adenine methyltransferase | |||
| ??? | Modification methylase HhaI | |||
| 11835 | M | M2.SenST203ORF12435P (100% identity) | M.Sen25782ORF11835P | |
| 11840 | 72 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20695 | R | type III restriction endonuclease subunit R | CAGAG | Sen25782ORF20695P |
| 20700 | pseudogene | |||
| 1440 | pseudogene | |||
| 1445 | M | M.Sens679ORF16435P (99% identity) | CAGAG | M.Sen25782ORF1445P |
| 1450 | R | 133 aa hypothetical protein | CAGAG | Sen25782ORF1445P |