Escherichia coli UCD-JA16 |
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Putative Escherichia coli UCD-JA16 RM systems
Ref: Coil,D.A. et al. unpublished
REBASE ref # 21259
Contig set: 5,058,707 bp
GenBank #: LJXX00000000 (NZ_LJXX00000000)
REBASE acronym: EcoJA16
Org_num: 18044
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2 | transposase | |||
| 3 | S | restriction endonuclease, partial | S.EcoJA16ORFIP | |
| 5 | M | M.SenceORFJP (100% identity) | M.EcoJA16ORFIP | |
| 7 | 107 aa hypothetical protein | |||
| ??? | restriction endonuclease | |||
| 23 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoJA16ORFEP |
| 25 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoJA16ORFEP |
| 27 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoJA16ORFEP |
| 30 | endoribonuclease SymE | |||
| 103 | 63 aa hypothetical protein | |||
| 104 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoJA16ORFCP |
| 111 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoJA16ORFCP |
| 115 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoJA16ORFCP |
| 116 | 217 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7 | 71 aa hypothetical protein | |||
| 8 | M | M.KpnYN1ORFGP (100% identity) | M.EcoJA16ORFAP | |
| 10 | transcriptional regulator | |||
| 21 | 231 aa hypothetical protein EC958_2227 | |||
| 23 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoJA16DcmP |
| ??? | V | V.SflC32DcmP (74% identity) | V.EcoJA16DcmP | |
| 29 | multidrug DMT transporter | |||
| 64 | 73 aa hypothetical protein | |||
| 66 | M | M.UbapRSB107ORFAP (100% identity) | M.EcoJA16ORFHP | |
| 71 | 126 aa hypothetical protein, partial | |||
| 47 | 83 aa hypothetical protein G945_04437 | |||
| 48 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M1.EcoJA16ORFFP |
| 49 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoJA16ORFFP |
| 50 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoJA16ORFFP |
| 51 | restriction endonuclease | |||
| 109 | ribulose-phosphate 3-epimerase | |||
| 110 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoJA16DamP |
| 112 | cell division protein DamX | |||
| 216 | ARAC-type regulatory protein, partial | |||
| 217 | M | M.EcosS9ORF10680P (100% identity) | M.EcoJA16ORFDP | |
| 219 | 86 aa hypothetical protein | |||
| 392 | DNA-binding protein fis | |||
| 394 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoJA16ORFBP |
| 396 | membrane protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | restriction endonuclease | |||
| 51 | R | EcosS9McrCP (100% identity) | EcoJA16McrCP | |
| 52 | R | EcosS3McrBP (100% identity) | EcoJA16McrBP | |
| 53 | 63 aa hypothetical protein | |||