Salmonella enterica subsp. enterica serovar Napoli SN310 |
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Putative Salmonella enterica subsp. enterica serovar Napoli SN310 RM systems
Ref: Huedo,P. et al. Genome Announc 3 (5), e01044-15 (2015)
REBASE ref # 20455
Contig set: 4,567,795 bp
GenBank #: LFIH00000000 (NZ_LFIH00000000)
REBASE acronym: SenSN310
Org_num: 17165
All begin ACI06_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 22405 | S | S3.Sen54117ORF3990P (100% identity) | RGACNNNNNNNTAA | S.SenSN310ORF22405P |
| 22410 | transposase | |||
| 18485 | pseudogene | |||
| 18490 | R | Sen174478ORF19560P (99% identity) | SenSN310ORF18495P | |
| 18495 | M | M.Sen174478ORF19560P (100% identity) | M.SenSN310ORF18495P | |
| ??? | S | S.Sen8273ORF4163P (12% identity) | S.SenSN310ORF18495P | |
| 18500 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 19350 | 238 aa hypothetical protein | |||
| 19355 | M | M.Sen13423ORF7840P (99% identity) | M.SenSN310ORF19355P | |
| 19360 | 297 aa hypothetical protein | |||
| 7905 | 79 aa hypothetical protein | |||
| 7910 | M | M.SenD7795ORFFP (100% identity) | M1.SenSN310ORF7910P | |
| 7915 | 172 aa hypothetical protein | |||
| 7920 | M | M.Sen54117ORF3186P (100% identity) | M2.SenSN310ORF7910P | |
| 7925 | replication protein | |||
| 19610 | multidrug DMT transporter | |||
| 19615 | V | V.StyUK1DcmP (100% identity) | V.SenSN310DcmP | |
| 19620 | M | M.SspZ54DcmP (100% identity) | CCWGG | M.SenSN310DcmP |
| 19625 | hydrolase | |||
| 16770 | Fis family transcriptional regulator | |||
| 16775 | M | M.Sen54117ORF482P (100% identity) | ATGCAT | M.SenSN310ORF16775P |
| 16780 | membrane protein | |||
| 12945 | ribulose-phosphate 3-epimerase | |||
| 12950 | M | M.StyTDamP (100% identity) | GATC | M.SenSN310DamP |
| 12955 | cell division protein DamX | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8940 | sugar transporter | |||
| 8945 | M | M.Sens29945ORF5080P (100% identity) | CAGAG | M.SenSN310ORF8945P |
| 8950 | R | Sen54117ORF3591P (99% identity) | CAGAG | SenSN310ORF8945P |
| 8955 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 18480 | membrane protein | |||
| 18485 | R | Sen54117MrrP (100% identity) | SenSN310MrrP | |
| 18490 | DEAD/DEAH box helicase | |||