Beggiatoa leptomitiformis D-402 |
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Putative Beggiatoa leptomitiformis D-402 RM systems
Ref: Fomenkov,A. et al. unpublished
REBASE ref # 21142
Complete sequence: 4,265,317 bp
GenBank #: CP012373
REBASE acronym: Ble402
Org_num: 11155
All begin AL038_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1445 | DUF45 domain-containing protein | |||
| 1450 | R | Ble401IVP (100% identity) | ATTAYNNNNNCTG | Ble402IVP |
| 1455 | S | S.Ble401IV (100% identity) | ATTAYNNNNNCTG | S.Ble402IV |
| 1460 | M | M.Ble401IV (100% identity) | ATTAYNNNNNCTG | M.Ble402IV |
| 1465 | 175 aa hypothetical protein | |||
| 6895 | PaaI family thioesterase | |||
| 6900 | M | M.Ble401ORF17405P (100% identity) | CAAYNNNNRTTG | M.Ble402VI |
| 6905 | S | S.Ble401ORF17405P (100% identity) | CAAYNNNNRTTG | S.Ble402VI |
| 6910 | R | Ble401ORF17405P (100% identity) | CAAYNNNNRTTG | Ble402VIP |
| 6915 | PQQ-dependent dehydrogenase, methanol/ethanol | |||
| 18775 | IS5 family transposase | |||
| 7545 | R | Ble401ORF16755P (100% identity) | ACAYNNNNNRTGT | Ble402VP |
| 7550 | S | S.Ble401ORF16755P (100% identity) | ACAYNNNNNRTGT | S.Ble402V |
| 7555 | GxxExxY protein | |||
| 7560 | M | M.Ble401ORF16755P (100% identity) | ACAYNNNNNRTGT | M.Ble402V |
| 7565 | Fe-S cluster assembly transcriptional regulator | |||
| 14995 | pentapeptide repeat-containing protein | |||
| 15000 | M | N-6 DNA methylase | M.Ble402ORF15000P | |
| 15005 | CBS domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 110 | DUF1738 domain-containing protein | |||
| 115 | RM | Ble401ORF5960P (100% identity) | GCTCCA | Ble402ORF115P |
| 120 | endonuclease | |||
| 1205 | transposase | |||
| 1210 | R | Ble401ORF4795P (100% identity) | Ble402ORF1215P | |
| ??? | M | 85 aa hypothetical protein | GCATGC | M.Ble402ORF1215BP |
| 18255 | IS1 family transposase | |||
| 1230 | M | M.Ble401ORF4795AP (100% identity) | GCATGC | M.Ble402ORF1215AP |
| 1235 | tRNA uridine-5-carboxymethylaminomethyl(34) | |||
| 18275 | 120 aa hypothetical protein | |||
| ??? | R | Ble401IIIP (100% identity) | SAGCTS | Ble402IIIP |
| 1425 | M | M.Ble401III (100% identity) | SAGCTS | M.Ble402III |
| 1430 | tyrosine-type recombinase/integrase | |||
| 3370 | aminotransferase class I/II-fold pyridoxal | |||
| 3375 | RM | Ble401ORF2655P (100% identity) | Ble402ORF3375P | |
| 3380 | acetyl-CoA C-acyltransferase | |||
| 18525 | 45 aa hypothetical protein | |||
| 4385 | RM | Ble401ORF1605AP (100% identity) | Ble402ORF4385AP | |
| 4390 | IS630 family transposase | |||
| 4395 | transposase | |||
| ??? | RM | 276 aa hypothetical protein | Ble402ORF4385BP | |
| 4405 | 335 aa hypothetical protein | |||
| 6250 | carboxyvinyl-carboxyphosphonate | |||
| 6255 | M | M.Ble401ORF18050P (100% identity) | GRCGYC | M.Ble402ORF6255P |
| 6260 | R | Ble401ORF18050P (100% identity) | GRCGYC | Ble402ORF6255P |
| 6265 | 8-amino-7-oxononanoate synthase | |||
| 6695 | 191 aa hypothetical protein | |||
| 6700 | RM | Ble401ORF17605AP (100% identity) | Ble402ORF6700AP | |
| 6705 | 76 aa hypothetical protein | |||
| 6710 | PIN domain-containing protein | |||
| 6715 | RM | Ble401ORF17605BP (100% identity) | Ble402ORF6700BP | |
| 6720 | AAA family ATPase | |||
| 7040 | Trk system potassium transporter TrkA | |||
| 7045 | RM | Ble401ORF17265P (100% identity) | Ble402ORF7045P | |
| 7050 | type III toxin-antitoxin system ToxN/AbiQ family | |||
| 8470 | NTP transferase domain-containing protein | |||
| ??? | R | Ble401ORF15820P (100% identity) | CCNGG | Ble402ORF8490P |
| 18845 | IS5 family transposase | |||
| 8490 | M | M.Ble401ORF15820P (100% identity) | CCNGG | M.Ble402ORF8490P |
| 8495 | heme ABC transporter permease | |||
| 9400 | restriction endonuclease subunit R | |||
| 9405 | M | M.Ble401ORF14895P (100% identity) | M.Ble402ORF9405P | |
| 9410 | GIY-YIG nuclease family protein | |||
| 10670 | 70 aa hypothetical protein | |||
| 10675 | M | M.Ble401I (100% identity) | GATC | M.Ble402I |
| 10680 | formylmethanofuran--tetrahydromethanopterin | |||
| 12450 | response regulator | |||
| 12455 | M | M.Ble401ORF11810P (100% identity) | AAGCTT | M.Ble402ORF12455P |
| 12695 | 108 aa hypothetical protein | |||
| 12700 | R | Ble401ORF11560P (100% identity) | RGCGCY | Ble402ORF12705P |
| 12705 | M | M.Ble401ORF11560P (100% identity) | RGCGCY | M.Ble402ORF12705P |
| 12710 | (Fe-S)-binding protein | |||
| 12765 | succinyl-diaminopimelate desuccinylase | |||
| 12770 | M | M.Ble401ORF11485BP (100% identity) | M.Ble402ORF12770AP | |
| 19155 | IS5 family transposase | |||
| 12785 | M | M.Ble401ORF11485AP (100% identity) | M.Ble402ORF12770BP | |
| 12790 | 128 aa hypothetical protein | |||
| 14675 | 78 aa hypothetical protein | |||
| 14680 | M | M.Ble401ORF9575P (100% identity) | M.Ble402ORF14680P | |
| 14685 | 211 aa hypothetical protein | |||
| 15395 | ATP-binding cassette domain-containing protein | |||
| 15400 | RM | Ble401II (100% identity) | GRAGCAG | Ble402II |
| 15405 | 324 aa hypothetical protein | |||
| 16025 | sensor histidine kinase | |||
| 16030 | M | M.Ble401ORF8225P (100% identity) | GGCC | M.Ble402ORF16030P |
| 16035 | lactoylglutathione lyase | |||
| 17475 | RNA methyltransferase | |||
| 17480 | R | Ble401ORF6735P (100% identity) | GGNCC | Ble402ORF17485P |
| 17485 | M | M.Ble401ORF6735P (100% identity) | GGNCC | M.Ble402ORF17485P |
| 17490 | tetratricopeptide repeat protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12780 | pseudogene | |||
| 12785 | M | M.Ble402ORF12770BP (88% identity) | M.Ble402ORF12785P | |
| 12790 | 128 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1385 | 247 aa hypothetical protein | |||
| ??? | R | Ble401MrrP (85% identity) | Ble402MrrP | |
| 1395 | iron ABC transporter ATP-binding protein | |||