Escherichia coli SF-088 |
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Putative Escherichia coli SF-088 RM systems
Ref: Stephens,C.M. et al. unpublished
REBASE ref # 21004
Complete sequence: 5,048,243 bp
GenBank #: CP012635
REBASE acronym: EcoSF088
Org_num: 16842
All begin AN203_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 20510 | restriction endonuclease | |||
| 20515 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoSF088ORF20515P |
| 20520 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoSF088ORF20515P |
| 20525 | R | EcoDP254ORF21685P (100% identity) | RTACNNNNGTG | EcoSF088ORF20515P |
| 20530 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1755 | cell division protein DamX | |||
| 1760 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoSF088DamP |
| 1765 | ribulose phosphate epimerase | |||
| 2370 | 59 aa hypothetical protein | |||
| 2375 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoSF088ORF2375P |
| 2380 | Fis family transcriptional regulator | |||
| 9630 | hydrolase | |||
| 9635 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.EcoSF088DcmP |
| 9640 | V | V.SflC32DcmP (74% identity) | V.EcoSF088DcmP | |
| 9645 | multidrug DMT transporter | |||
| 13315 | 75 aa hypothetical protein | |||
| 13335 | M | M.SboBSORF1444P (100% identity) | A | M.EcoSF088ORF13335P |
| 13340 | TrmB family transcriptional regulator | |||
| 20760 | restriction endonuclease | |||
| 20765 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoSF088ORF20770P |
| ??? | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoSF088ORF20770P |
| 20775 | M | M2.EcosEC4ORF20110P (99% identity) | GGTCTC | M2.EcoSF088ORF20770P |
| 20780 | ATP-binding protein | |||
| 24160 | 330 aa hypothetical protein | |||
| 24165 | M | M.SflFF35ORF20P (100% identity) | GGCC | M.EcoSF088ORF24165P |
| 24170 | 77 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9425 | type IV pilin | |||
| 9430 | R | Sensp14178ORF9290P (100% identity) | EcoSF088ORF9435P | |
| 9435 | M | M.Sensp14178ORF9290P (100% identity) | M.EcoSF088ORF9435P | |
| 9440 | integrase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20750 | pseudogene | |||
| 20755 | R | EcosS3McrBP (100% identity) | EcoSF088McrBP | |
| 20760 | R | EcosS9McrCP (100% identity) | EcoSF088McrCP | |
| 20765 | restriction endonuclease | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 14225 | protein ninE | |||
| 14230 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoSF088ORF14230P |
| 14235 | 146 aa hypothetical protein | |||