Salmonella enterica subsp. enterica serovar Agona 49.E.09 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Agona 49.E.09 RM systems
Ref: Zhou,Z. et al. PLoS Genet. 9 (4), E1003471 (2013)
REBASE ref # 19162
Contig set: 4,744,074 bp
GenBank #: CATU00000000 (NZ_CATU00000000)
REBASE acronym: Sen49E09
Org_num: 16242
All begin SA49_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4194 | protein TIR | |||
| 4195 | M | M1.SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | M1.Sen49E09ORF4195P |
| 4196 | M | M2.SenSA5ORF17266P (99% identity) | CCCNNNNNRTAG | M2.Sen49E09ORF4195P |
| 4197 | S | S.SenSA4ORF5001P (100% identity) | CCCNNNNNRTAG | S.Sen49E09ORF4195P |
| 4198 | R | SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | Sen49E09ORF4195P |
| 4199 | filamentation induced by cAMP protein Fic | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4178 | 97 aa hypothetical protein | |||
| 4179 | M | M.SenSA2ORF2906P (92% identity) | CAGCTG | M.Sen49E09ORF4179P |
| 4180 | 670 aa hypothetical protein | |||
| 2936 | periplasmic protein | |||
| 2937 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen49E09ORF2937P |
| 2938 | DNA-binding protein Fis | |||
| 4602 | protein DamX | |||
| 4603 | M | M.StyTDamP (100% identity) | GATC | M.Sen49E09DamP |
| 4604 | ribulose-phosphate 3-epimerase | |||
| 4681 | Gp51 family protein | |||
| 4682 | M | M.Sen76333ORF16870P (94% identity) | GATC | M.Sen49E09ORF4682P |
| 4683 | uncharacterized protein | |||
| 218 | 113 aa hypothetical protein | |||
| 219 | M | M.SenSH7ORF6070P (100% identity) | GATC | M.Sen49E09ORF219P |
| 220 | bacteriophage replication gene A | |||
| 221 | 62 aa hypothetical protein | |||
| 222 | M | M.SenSH7ORF6090P (100% identity) | CGGCCG | M.Sen49E09ORF222P |
| ??? | R | SenSH7ORF6090P (100% identity) | CGGCCG | Sen49E09ORF222P |
| 224 | pbsx family phage portal protein | |||
| 2622 | pseudogene | |||
| 2623 | V | V.StyUK1DcmP (100% identity) | V.Sen49E09DcmP | |
| 2624 | M | M.SenSA5DcmP (100% identity) | CCWGG | M.Sen49E09DcmP |
| 2625 | metal dependent phosphohydrolase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3880 | major facilitator superfamily MFS_1 | |||
| 3881 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen49E09ORF3881P |
| 3882 | R | SenSA5ORF13013P (100% identity) | CAGAG | Sen49E09ORF3881P |
| 3883 | cyanide-insensitive oxidase CioA | |||