Salmonella enterica subsp. enterica serovar Agona 05.O.06 |
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Putative Salmonella enterica subsp. enterica serovar Agona 05.O.06 RM systems
Ref: Zhou,Z. et al. PLoS Genet. 9 (4), E1003471 (2013)
REBASE ref # 19162
Contig set: 4,785,181 bp
GenBank #: CATM00000000 (NZ_CATM00000000)
REBASE acronym: Sen05O02
Org_num: 16237
All begin SA05_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2954 | protein TIR | |||
| 2955 | M | M1.SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | M1.Sen05O02ORF2955P |
| 2956 | M | M2.SenSA5ORF17266P (99% identity) | CCCNNNNNRTAG | M2.Sen05O02ORF2955P |
| 2957 | S | S.SenSA4ORF5001P (100% identity) | CCCNNNNNRTAG | S.Sen05O02ORF2955P |
| 2958 | R | SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | Sen05O02ORF2955P |
| 2959 | filamentation induced by cAMP protein Fic | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3825 | M | DNA adenine methylase | GATC | M.Sen05O02DamP |
| 3826 | ribulose-phosphate 3-epimerase | |||
| 2938 | 97 aa hypothetical protein | |||
| 2939 | M | M.SenSA2ORF2906P (92% identity) | CAGCTG | M.Sen05O02ORF2939P |
| 2940 | 670 aa hypothetical protein | |||
| 3764 | metal dependent phosphohydrolase | |||
| 3765 | M | M.SenSA5DcmP (100% identity) | CCWGG | M.Sen05O02DcmP |
| 3766 | V | very short patch repair protein | V.Sen05O02DcmP | |
| 3767 | carboxylate/amino acid/amine transporter | |||
| 3790 | periplasmic protein | |||
| 3791 | M | DNA methylase | ATGCAT | M.Sen05O02ORF3791P |
| 3792 | DNA-binding protein Fis | |||
| 824 | 113 aa hypothetical protein | |||
| 825 | M | M.SenSH7ORF6070P (100% identity) | GATC | M.Sen05O02ORF825P |
| 826 | bacteriophage replication gene A | |||
| 827 | 62 aa hypothetical protein | |||
| 828 | M | M.SenSH7ORF6090P (100% identity) | CGGCCG | M.Sen05O02ORF828P |
| ??? | R | SenSH7ORF6090P (100% identity) | CGGCCG | Sen05O02ORF828P |
| 830 | pbsx family phage portal protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3604 | cyanide-insensitive oxidase CioA | |||
| 3605 | R | SenSA5ORF13013P (100% identity) | CAGAG | Sen05O02ORF3606P |
| 3606 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen05O02ORF3606P |
| 3607 | major facilitator superfamily MFS_1 | |||