Salmonella enterica subsp. enterica serovar Agona 06.O.05 |
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Putative Salmonella enterica subsp. enterica serovar Agona 06.O.05 RM systems
Ref: Zhou,Z. et al. PLoS Genet. 9 (4), E1003471 (2013)
REBASE ref # 19162
Contig set: 4,885,814 bp
GenBank #: CATL00000000 (NZ_CATL00000000)
REBASE acronym: Sen06O05
Org_num: 16231
All begin SA06_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3539 | protein TIR | |||
| 3540 | M | M1.SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | M1.Sen06O05ORF3540P |
| 3541 | M | M2.SenSA5ORF17266P (99% identity) | CCCNNNNNRTAG | M2.Sen06O05ORF3540P |
| 3542 | S | S.SenSA4ORF5001P (100% identity) | CCCNNNNNRTAG | S.Sen06O05ORF3540P |
| 3543 | R | SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | Sen06O05ORF3540P |
| 3544 | filamentation induced by cAMP protein Fic | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4319 | protein YubE | |||
| 4320 | M | M.Sfl712783ORFFP (100% identity) | M.Sen06O05ORF4320P | |
| 4321 | YccB | |||
| 3523 | 97 aa hypothetical protein | |||
| 3524 | M | M.SenSA2ORF2906P (92% identity) | CAGCTG | M.Sen06O05ORF3524P |
| 3525 | 670 aa hypothetical protein | |||
| 1191 | metal dependent phosphohydrolase | |||
| 1192 | M | M.SenSA5DcmP (100% identity) | CCWGG | M.Sen06O05DcmP |
| 1193 | V | very short patch repair protein | V.Sen06O05DcmP | |
| 1194 | carboxylate/amino acid/amine transporter | |||
| 1596 | periplasmic protein | |||
| 1597 | M | DNA methylase | ATGCAT | M.Sen06O05ORF1597P |
| 1598 | DNA-binding protein Fis | |||
| 4753 | protein DamX | |||
| 4754 | M | DNA adenine methylase | GATC | M.Sen06O05DamP |
| 4755 | ribulose-phosphate 3-epimerase | |||
| 659 | 113 aa hypothetical protein | |||
| 660 | M | M.SenSH7ORF6070P (100% identity) | GATC | M.Sen06O05ORF660P |
| 661 | bacteriophage replication gene A | |||
| 662 | 62 aa hypothetical protein | |||
| 663 | M | M.SenSH7ORF6090P (100% identity) | CGGCCG | M.Sen06O05ORF663P |
| ??? | R | SenSH7ORF6090P (100% identity) | CGGCCG | Sen06O05ORF663P |
| 665 | pbsx family phage portal protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1989 | cyanide-insensitive oxidase CioA | |||
| 1990 | R | SenSA5ORF13013P (100% identity) | CAGAG | Sen06O05ORF1991P |
| 1991 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen06O05ORF1991P |
| 1992 | major facilitator superfamily MFS_1 | |||