Salmonella enterica subsp. enterica serovar Agona 08.A.05 |
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Putative Salmonella enterica subsp. enterica serovar Agona 08.A.05 RM systems
Ref: Zhou,Z. et al. PLoS Genet. 9 (4), E1003471 (2013)
REBASE ref # 19162
Contig set: 4,805,621 bp
GenBank #: CATJ00000000 (NZ_CATJ00000000)
REBASE acronym: Sen08A05
Org_num: 16230
All begin SA08_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4342 | filamentation induced by cAMP protein Fic | |||
| 4343 | R | SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | Sen08A05ORF4345P |
| 4344 | S | S.SenSA4ORF5001P (100% identity) | CCCNNNNNRTAG | S.Sen08A05ORF4345P |
| 4345 | M | M2.SenSA5ORF17266P (99% identity) | CCCNNNNNRTAG | M2.Sen08A05ORF4345P |
| 4346 | M | M1.SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | M1.Sen08A05ORF4345P |
| 4347 | protein TIR | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4100 | periplasmic protein | |||
| 4101 | M | DNA methylase | ATGCAT | M.Sen08A05ORF4101P |
| 4102 | DNA-binding protein Fis | |||
| 4687 | protein DamX | |||
| 4688 | M | DNA adenine methylase | GATC | M.Sen08A05DamP |
| 4689 | ribulose-phosphate 3-epimerase | |||
| 2832 | protein YubE | |||
| 2833 | M | M.Sfl712783ORFFP (100% identity) | M.Sen08A05ORF2833P | |
| 2834 | YccB | |||
| 61 | 113 aa hypothetical protein | |||
| 62 | M | M.SenSH7ORF6070P (100% identity) | GATC | M.Sen08A05ORF62P |
| 63 | bacteriophage replication gene A | |||
| 64 | 62 aa hypothetical protein | |||
| 65 | M | M.SenSH7ORF6090P (100% identity) | CGGCCG | M.Sen08A05ORF65P |
| ??? | R | SenSH7ORF6090P (100% identity) | CGGCCG | Sen08A05ORF65P |
| 67 | pbsx family phage portal protein | |||
| 4361 | 670 aa hypothetical protein | |||
| 4362 | M | M.SenSA2ORF2906P (92% identity) | CAGCTG | M.Sen08A05ORF4362P |
| 4363 | 97 aa hypothetical protein | |||
| 2683 | carboxylate/amino acid/amine transporter | |||
| 2684 | V | very short patch repair protein | V.Sen08A05DcmP | |
| 2685 | M | M.SenSA5DcmP (100% identity) | CCWGG | M.Sen08A05DcmP |
| 2686 | metal dependent phosphohydrolase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 314 | major facilitator superfamily MFS_1 | |||
| 315 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen08A05ORF315P |
| 316 | R | SenSA5ORF13013P (100% identity) | CAGAG | Sen08A05ORF315P |
| 317 | cyanide-insensitive oxidase CioA | |||