Salmonella enterica subsp. enterica serovar Agona 11.A.05 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Agona 11.A.05 RM systems
Ref: Zhou,Z. et al. PLoS Genet. 9 (4), E1003471 (2013)
REBASE ref # 19162
Contig set: 4,730,053 bp
GenBank #: CATE00000000 (NZ_CATE00000000)
REBASE acronym: Sen11A05
Org_num: 16228
All begin SA11_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2449 | filamentation induced by cAMP protein Fic | |||
| 2450 | R | SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | Sen11A05ORF2452P |
| 2451 | S | S.SenSA4ORF5001P (100% identity) | CCCNNNNNRTAG | S.Sen11A05ORF2452P |
| 2452 | M | M2.SenSA5ORF17266P (99% identity) | CCCNNNNNRTAG | M2.Sen11A05ORF2452P |
| 2453 | M | M1.SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | M1.Sen11A05ORF2452P |
| 2454 | protein TIR | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2658 | metal dependent phosphohydrolase | |||
| 2659 | M | M.SenSA5DcmP (100% identity) | CCWGG | M.Sen11A05DcmP |
| 2660 | V | very short patch repair protein | V.Sen11A05DcmP | |
| 2661 | carboxylate/amino acid/amine transporter | |||
| 4574 | ribulose-phosphate 3-epimerase | |||
| 4575 | M | DNA adenine methylase | GATC | M.Sen11A05DamP |
| 4576 | protein DamX | |||
| 4321 | periplasmic protein | |||
| 4322 | M | DNA methylase | ATGCAT | M.Sen11A05ORF4322P |
| 4323 | DNA-binding protein Fis | |||
| 2468 | 670 aa hypothetical protein | |||
| 2469 | M | M.SenSA2ORF2906P (92% identity) | CAGCTG | M.Sen11A05ORF2469P |
| 2470 | 97 aa hypothetical protein | |||
| 478 | 113 aa hypothetical protein | |||
| 479 | M | M.SenSH7ORF6070P (100% identity) | GATC | M.Sen11A05ORF479P |
| 480 | bacteriophage replication gene A | |||
| 481 | 62 aa hypothetical protein | |||
| 482 | M | M.SenSH7ORF6090P (100% identity) | CGGCCG | M.Sen11A05ORF482P |
| ??? | R | SenSH7ORF6090P (100% identity) | CGGCCG | Sen11A05ORF482P |
| 484 | pbsx family phage portal protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3538 | major facilitator superfamily MFS_1 | |||
| 3539 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen11A05ORF3539P |
| 3540 | R | SenSA5ORF13013P (100% identity) | CAGAG | Sen11A05ORF3539P |
| 3541 | cyanide-insensitive oxidase CioA | |||