Salmonella enterica subsp. enterica serovar Agona 12.A.06 |
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Putative Salmonella enterica subsp. enterica serovar Agona 12.A.06 RM systems
Ref: Zhou,Z. et al. PLoS Genet. 9 (4), E1003471 (2013)
REBASE ref # 19162
Contig set: 4,712,277 bp
GenBank #: CATD00000000 (NZ_CATD00000000)
REBASE acronym: Sen12A06
Org_num: 16227
All begin SA12_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2771 | filamentation induced by cAMP protein Fic | |||
| 2772 | R | SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | Sen12A06ORF2774P |
| 2773 | S | S.SenSA4ORF5001P (100% identity) | CCCNNNNNRTAG | S.Sen12A06ORF2774P |
| 2774 | M | M2.SenSA5ORF17266P (99% identity) | CCCNNNNNRTAG | M2.Sen12A06ORF2774P |
| 2775 | M | M1.SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | M1.Sen12A06ORF2774P |
| 2776 | protein TIR | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3098 | periplasmic protein | |||
| 3099 | M | DNA methylase | ATGCAT | M.Sen12A06ORF3099P |
| 3100 | DNA-binding protein Fis | |||
| 4600 | protein DamX | |||
| 4601 | M | DNA adenine methylase | GATC | M.Sen12A06DamP |
| 4602 | ribulose-phosphate 3-epimerase | |||
| 61 | 113 aa hypothetical protein | |||
| 62 | M | M.SenSH7ORF6070P (100% identity) | GATC | M.Sen12A06ORF62P |
| 63 | bacteriophage replication gene A | |||
| 64 | 62 aa hypothetical protein | |||
| 65 | M | M.SenSH7ORF6090P (100% identity) | CGGCCG | M.Sen12A06ORF65P |
| ??? | R | SenSH7ORF6090P (100% identity) | CGGCCG | Sen12A06ORF65P |
| 67 | pbsx family phage portal protein | |||
| 2790 | 670 aa hypothetical protein | |||
| 2791 | M | M.SenSA2ORF2906P (92% identity) | CAGCTG | M.Sen12A06ORF2791P |
| 2792 | 97 aa hypothetical protein | |||
| 2567 | carboxylate/amino acid/amine transporter | |||
| 2568 | V | very short patch repair protein | V.Sen12A06DcmP | |
| 2569 | M | M.SenSA5DcmP (100% identity) | CCWGG | M.Sen12A06DcmP |
| 2570 | metal dependent phosphohydrolase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 317 | major facilitator superfamily MFS_1 | |||
| 318 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen12A06ORF318P |
| 319 | R | SenSA5ORF13013P (100% identity) | CAGAG | Sen12A06ORF318P |
| 320 | cyanide-insensitive oxidase CioA | |||