Salmonella enterica subsp. enterica serovar Agona 22.H.04 |
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Putative Salmonella enterica subsp. enterica serovar Agona 22.H.04 RM systems
Ref: Zhou,Z. et al. PLoS Genet. 9 (4), E1003471 (2013)
REBASE ref # 19162
Contig set: 4,777,634 bp
GenBank #: CAST00000000 (NZ_CAST00000000)
REBASE acronym: Sen22H04
Org_num: 16234
All begin SA22_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4486 | protein TIR | |||
| 4487 | M | M1.SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | M1.Sen22H04ORF4487P |
| 4488 | M | M2.SenSA5ORF17266P (99% identity) | CCCNNNNNRTAG | M2.Sen22H04ORF4487P |
| 4489 | S | S.SenSA4ORF5001P (100% identity) | CCCNNNNNRTAG | S.Sen22H04ORF4487P |
| 4490 | R | SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | Sen22H04ORF4487P |
| 4491 | filamentation induced by cAMP protein Fic | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4470 | 97 aa hypothetical protein | |||
| 4471 | M | M.SenSA2ORF2906P (92% identity) | CAGCTG | M.Sen22H04ORF4471P |
| 4472 | 670 aa hypothetical protein | |||
| 2017 | metal dependent phosphohydrolase | |||
| 2018 | M | M.SenSA5DcmP (100% identity) | CCWGG | M.Sen22H04DcmP |
| 2019 | V | V.StyUK1DcmP (100% identity) | V.Sen22H04DcmP | |
| 2020 | carboxylate/amino acid/amine transporter | |||
| 4316 | ribulose-phosphate 3-epimerase | |||
| 4317 | M | DNA adenine methylase | GATC | M.Sen22H04DamP |
| 4318 | protein DamX | |||
| 2376 | periplasmic protein | |||
| 2377 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen22H04ORF2377P |
| 2378 | DNA-binding protein Fis | |||
| 1506 | Replication gene A protein | |||
| ??? | M | M.SenS976ORF3185P (100% identity) | GATC | M.Sen22H04ORF1507P |
| 1508 | Gp91 | |||
| 1058 | DksA/TraR family C4-type zinc finger protein | |||
| 1059 | M | M.SenSA5ORF21849P (100% identity) | GATC | M.Sen22H04ORF1059P |
| 1060 | bacteriophage replication gene A | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 677 | major facilitator superfamily MFS_1 | |||
| 678 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen22H04ORF678P |
| 679 | R | SenSA5ORF13013P (100% identity) | CAGAG | Sen22H04ORF678P |
| 680 | cyanide-insensitive oxidase CioA | |||