Salmonella enterica subsp. enterica serovar Agona 29.O.08 |
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Putative Salmonella enterica subsp. enterica serovar Agona 29.O.08 RM systems
Ref: Zhou,Z. et al. PLoS Genet. 9 (4), E1003471 (2013)
REBASE ref # 19162
Contig set: 4,729,145 bp
GenBank #: CASO00000000 (NZ_CASO00000000)
REBASE acronym: Sen29O08
Org_num: 16216
All begin SA29_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1221 | protein TIR | |||
| 1222 | M | M1.SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | M1.Sen29O08ORF1222P |
| 1223 | M | M2.SenSA5ORF17266P (99% identity) | CCCNNNNNRTAG | M2.Sen29O08ORF1222P |
| 1224 | S | S.SenSA4ORF5001P (100% identity) | CCCNNNNNRTAG | S.Sen29O08ORF1222P |
| 1225 | R | SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | Sen29O08ORF1222P |
| 1226 | filamentation induced by cAMP protein Fic | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4285 | M | M.StyTDamP (100% identity) | GATC | M.Sen29O08DamP |
| 4286 | ribulose-phosphate 3-epimerase | |||
| 1205 | 97 aa hypothetical protein | |||
| 1206 | M | M.SenSA2ORF2906P (92% identity) | CAGCTG | M.Sen29O08ORF1206P |
| 1207 | 670 aa hypothetical protein | |||
| 1990 | periplasmic protein | |||
| 1991 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen29O08ORF1991P |
| 1992 | DNA-binding protein Fis | |||
| 4306 | carboxylate/amino acid/amine transporter | |||
| 4307 | V | V.StyUK1DcmP (100% identity) | V.Sen29O08DcmP | |
| 4308 | M | M.SenSA5DcmP (100% identity) | CCWGG | M.Sen29O08DcmP |
| 4309 | metal dependent phosphohydrolase | |||
| 2754 | bacteriophage replication gene A | |||
| 2755 | M | M.SenSA5ORF21849P (100% identity) | GATC | M.Sen29O08ORF2755P |
| 2756 | DksA/TraR family C4-type zinc finger protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3408 | major facilitator superfamily MFS_1 | |||
| 3409 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen29O08ORF3409P |
| 3410 | R | SenSA5ORF13013P (100% identity) | CAGAG | Sen29O08ORF3409P |
| 3411 | cyanide-insensitive oxidase CioA | |||