Salmonella enterica subsp. enterica serovar Agona 54.O.08 |
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Putative Salmonella enterica subsp. enterica serovar Agona 54.O.08 RM systems
Ref: Zhou,Z. et al. PLoS Genet. 9 (4), E1003471 (2013)
REBASE ref # 19162
Contig set: 4,709,396 bp
GenBank #: CART00000000 (NZ_CART00000000)
REBASE acronym: Sen54O08
Org_num: 16201
All begin SA54_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4258 | filamentation induced by cAMP protein Fic | |||
| 4259 | R | SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | Sen54O08ORF4261P |
| 4260 | S | S.SenSA4ORF5001P (100% identity) | CCCNNNNNRTAG | S.Sen54O08ORF4261P |
| 4261 | M | M2.SenSA5ORF17266P (99% identity) | CCCNNNNNRTAG | M2.Sen54O08ORF4261P |
| 4262 | M | M1.SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | M1.Sen54O08ORF4261P |
| 4263 | protein TIR | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4067 | periplasmic protein | |||
| 4068 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen54O08ORF4068P |
| 4069 | DNA-binding protein Fis | |||
| 4593 | protein DamX | |||
| 4594 | M | M.StyTDamP (100% identity) | GATC | M.Sen54O08DamP |
| 4595 | ribulose-phosphate 3-epimerase | |||
| 4277 | 670 aa hypothetical protein | |||
| 4278 | M | M.SenSA2ORF2906P (92% identity) | CAGCTG | M.Sen54O08ORF4278P |
| 4279 | 97 aa hypothetical protein | |||
| 2112 | carboxylate/amino acid/amine transporter | |||
| 2113 | V | V.StyUK1DcmP (100% identity) | V.Sen54O08DcmP | |
| 2114 | M | M.SenSA5DcmP (100% identity) | CCWGG | M.Sen54O08DcmP |
| 2115 | metal dependent phosphohydrolase | |||
| 475 | 113 aa hypothetical protein | |||
| 476 | M | M.SenSH7ORF6070P (100% identity) | GATC | M.Sen54O08ORF476P |
| 477 | bacteriophage replication gene A | |||
| 478 | 62 aa hypothetical protein | |||
| 479 | M | M.SenSH7ORF6090P (100% identity) | CGGCCG | M.Sen54O08ORF479P |
| ??? | R | SenSH7ORF6090P (100% identity) | CGGCCG | Sen54O08ORF479P |
| 481 | pbsx family phage portal protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 656 | major facilitator superfamily MFS_1 | |||
| 657 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen54O08ORF657P |
| 658 | R | SenSA5ORF13013P (100% identity) | CAGAG | Sen54O08ORF657P |
| 659 | cyanide-insensitive oxidase CioA | |||