Salmonella enterica subsp. enterica serovar Agona 56.O.08 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Agona 56.O.08 RM systems
Ref: Zhou,Z. et al. PLoS Genet. 9 (4), E1003471 (2013)
REBASE ref # 19162
Contig set: 4,707,499 bp
GenBank #: CARR00000000 (NZ_CARR00000000)
REBASE acronym: Sen56O08
Org_num: 16190
All begin SA56_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2007 | filamentation induced by cAMP protein Fic | |||
| 2008 | R | SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | Sen56O08ORF2010P |
| 2009 | S | S.SenSA4ORF5001P (100% identity) | CCCNNNNNRTAG | S.Sen56O08ORF2010P |
| 2010 | M | M2.SenSA5ORF17266P (99% identity) | CCCNNNNNRTAG | M2.Sen56O08ORF2010P |
| 2011 | M | M1.SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | M1.Sen56O08ORF2010P |
| 2012 | protein TIR | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4379 | ribulose-phosphate 3-epimerase | |||
| 4380 | M | M.StyTDamP (100% identity) | GATC | M.Sen56O08DamP |
| 4381 | protein DamX | |||
| 2091 | periplasmic protein | |||
| 2092 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen56O08ORF2092P |
| 2093 | DNA-binding protein Fis | |||
| 61 | 113 aa hypothetical protein | |||
| 62 | M | M.SenSH7ORF6070P (100% identity) | GATC | M.Sen56O08ORF62P |
| 63 | bacteriophage replication gene A | |||
| 64 | 62 aa hypothetical protein | |||
| 65 | M | M.SenSH7ORF6090P (100% identity) | CGGCCG | M.Sen56O08ORF65P |
| ??? | R | SenSH7ORF6090P (100% identity) | CGGCCG | Sen56O08ORF65P |
| 67 | pbsx family phage portal protein | |||
| 2026 | 670 aa hypothetical protein | |||
| 2027 | M | M.SenSA2ORF2906P (92% identity) | CAGCTG | M.Sen56O08ORF2027P |
| 2028 | 97 aa hypothetical protein | |||
| 2368 | carboxylate/amino acid/amine transporter | |||
| 2369 | V | V.StyUK1DcmP (100% identity) | V.Sen56O08DcmP | |
| 2370 | M | M.SenSA5DcmP (100% identity) | CCWGG | M.Sen56O08DcmP |
| 2371 | metal dependent phosphohydrolase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 315 | major facilitator superfamily MFS_1 | |||
| 316 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen56O08ORF316P |
| 317 | R | SenSA5ORF13013P (100% identity) | CAGAG | Sen56O08ORF316P |
| 318 | cyanide-insensitive oxidase CioA | |||