Salmonella enterica subsp. enterica serovar Agona 58.E.08 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Agona 58.E.08 RM systems
Ref: Zhou,Z. et al. PLoS Genet. 9 (4), E1003471 (2013)
REBASE ref # 19162
Contig set: 4,709,855 bp
GenBank #: CARQ00000000 (NZ_CARQ00000000)
REBASE acronym: Sen58E08
Org_num: 16192
All begin SA58_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2636 | filamentation induced by cAMP protein Fic | |||
| 2637 | R | SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | Sen58E08ORF2639P |
| 2638 | S | S.SenSA4ORF5001P (100% identity) | CCCNNNNNRTAG | S.Sen58E08ORF2639P |
| 2639 | M | M2.SenSA5ORF17266P (99% identity) | CCCNNNNNRTAG | M2.Sen58E08ORF2639P |
| 2640 | M | M1.SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | M1.Sen58E08ORF2639P |
| 2641 | protein TIR | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4589 | ribulose-phosphate 3-epimerase | |||
| 4590 | M | M.StyTDamP (100% identity) | GATC | M.Sen58E08DamP |
| 4591 | protein DamX | |||
| 2724 | periplasmic protein | |||
| 2725 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen58E08ORF2725P |
| 2726 | DNA-binding protein Fis | |||
| 2655 | 670 aa hypothetical protein | |||
| 2656 | M | M.SenSA2ORF2906P (92% identity) | CAGCTG | M.Sen58E08ORF2656P |
| 2657 | 97 aa hypothetical protein | |||
| 2427 | carboxylate/amino acid/amine transporter | |||
| 2428 | V | V.StyUK1DcmP (100% identity) | V.Sen58E08DcmP | |
| 2429 | M | M.SenSA5DcmP (100% identity) | CCWGG | M.Sen58E08DcmP |
| 2430 | metal dependent phosphohydrolase | |||
| 475 | 113 aa hypothetical protein | |||
| 476 | M | M.SenSH7ORF6070P (100% identity) | GATC | M.Sen58E08ORF476P |
| 477 | bacteriophage replication gene A | |||
| 478 | 62 aa hypothetical protein | |||
| 479 | M | M.SenSH7ORF6090P (100% identity) | CGGCCG | M.Sen58E08ORF479P |
| ??? | R | SenSH7ORF6090P (100% identity) | CGGCCG | Sen58E08ORF479P |
| 481 | pbsx family phage portal protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 727 | major facilitator superfamily MFS_1 | |||
| 728 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen58E08ORF728P |
| 729 | R | SenSA5ORF13013P (100% identity) | CAGAG | Sen58E08ORF728P |
| 730 | cyanide-insensitive oxidase CioA | |||