Salmonella enterica subsp. enterica serovar Agona 59.F.08 |
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Putative Salmonella enterica subsp. enterica serovar Agona 59.F.08 RM systems
Ref: Zhou,Z. et al. PLoS Genet. 9 (4), E1003471 (2013)
REBASE ref # 19162
Contig set: 4,708,843 bp
GenBank #: CARP00000000 (NZ_CARP00000000)
REBASE acronym: Sen59F08
Org_num: 16189
All begin SA59_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4484 | filamentation induced by cAMP protein Fic | |||
| 4485 | R | SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | Sen59F08ORF4487P |
| 4486 | S | S.SenSA4ORF5001P (100% identity) | CCCNNNNNRTAG | S.Sen59F08ORF4487P |
| 4487 | M | M2.SenSA5ORF17266P (99% identity) | CCCNNNNNRTAG | M2.Sen59F08ORF4487P |
| 4488 | M | M1.SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | M1.Sen59F08ORF4487P |
| 4489 | protein TIR | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4242 | periplasmic protein | |||
| 4243 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen59F08ORF4243P |
| 4244 | DNA-binding protein Fis | |||
| 4594 | protein DamX | |||
| 4595 | M | M.StyTDamP (100% identity) | GATC | M.Sen59F08DamP |
| 4596 | ribulose-phosphate 3-epimerase | |||
| 61 | 113 aa hypothetical protein | |||
| 62 | M | M.SenSH7ORF6070P (100% identity) | GATC | M.Sen59F08ORF62P |
| 63 | bacteriophage replication gene A | |||
| 64 | 62 aa hypothetical protein | |||
| 65 | M | M.SenSH7ORF6090P (100% identity) | CGGCCG | M.Sen59F08ORF65P |
| ??? | R | SenSH7ORF6090P (100% identity) | CGGCCG | Sen59F08ORF65P |
| 67 | pbsx family phage portal protein | |||
| 4503 | 670 aa hypothetical protein | |||
| 4504 | M | M.SenSA2ORF2906P (92% identity) | CAGCTG | M.Sen59F08ORF4504P |
| 4505 | 97 aa hypothetical protein | |||
| 2143 | carboxylate/amino acid/amine transporter | |||
| 2144 | V | V.StyUK1DcmP (100% identity) | V.Sen59F08DcmP | |
| 2145 | M | M.SenSA5DcmP (100% identity) | CCWGG | M.Sen59F08DcmP |
| 2146 | metal dependent phosphohydrolase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 312 | major facilitator superfamily MFS_1 | |||
| 313 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen59F08ORF313P |
| 314 | R | SenSA5ORF13013P (100% identity) | CAGAG | Sen59F08ORF313P |
| 315 | cyanide-insensitive oxidase CioA | |||